Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30278g00002 ATGGTGCAATCAAAGAAATTTAGAGGTGTCAGGCAACGCCACTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAAACTGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGGAACGCCAAGACTAACTTCCCAGTTTCAGACAATAATAATAATAATAATATCAACAACACTTCCACTGCCACTGCTTCTTCTTCATCTTCCACAACAACATTCTCTGCAGTTCTTAGTGCAAAGCTCAGGAAGTGCTGCAAGTCCCCGTCACCTTCACTCACATGCCTCAGGCTCGACACTGAGAATTGCCACATTGGTGTCTGGCAGAAGCGCGCAGGGCCTCGCTCCGAATCCAACTGGATCATGATGGTCGAGTTGGAAAGGAACAACATGAACAAGAACAAGAACAACAACAACACTCTCACCACCACCGAAGAAGCTGCTTCTGATTCTGAGACGGTGAAGCCAGAGGAAAGCAGCCATGGTGTTGGTCGCTTGGATGAGGAACAGAGGATTGCCCTGCAGATGATAGAAGAGCTTCTCAATAGGAATTAA 603 0.471 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSDNNNNNNINNTSTATASSSSSTTTFSAVLSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSESNWIMMVELERNNMNKNKNNNNTLTTTEEAASDSETVKPEESSHGVGRLDEEQRIALQMIEELLNRN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30278g00002 200 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 MobiDBLite consensus disorder prediction 62 84 - -
Stsc30278g00002 200 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Stsc30278g00002 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 158 - -
Stsc30278g00002 200 MobiDBLite consensus disorder prediction 166 183 - -
Stsc30278g00002 200 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Stsc30278g00002 200 MobiDBLite consensus disorder prediction 147 165 - -
Stsc30278g00002 200 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Stsc30278g00002 200 MobiDBLite consensus disorder prediction 147 183 - -
Stsc30278g00002 200 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30278g00002 Stsc-Chr30278 11664 12351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30278g00002 1 200 AP2-EREBP Transcription Factor Family AT1G15360 62.319 1.23e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30278g00002 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30278g00002 - - gmx:100785898 258.455