Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30277g00013 ATGAGTTTTCAAGATATACAAGGTGGCCCTAACGCGCCCCTCCGTCGATCCCAGCCTCCCTCCCAGGCCATCGCTGCCGGAATCTTCCAGATCAACACTTCCCTCGCCACTTTCCGCCGCCTCGTTGATGCCCTTGGAACCGTTAAAGACACTCCCGACCACCGTCACAAGCTGCATAACACGAGACAGAGGATATTGCAGCTGGTGAAGGATACTTCTGCTAAGCTCAAGTCTTTGACTCAATCTGATCGCGATGCTGCTTCTTCTAATGCTAACAAGAAAATTGAAGATGCTAAGCTAGTGAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAAGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACACCTACTGCCCCACCTTCTTCTTTCCCGACAAGCTCTGGCTCCGGTGAAGAATCAGTTGAGAGAGACCAGGAAAGCCAACCTTTTATCAGAGAGCAAAGAAGGCAAGAGGTGCTTCTGTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGTATTAGAGAGGTACAAGAACAAATCGGACAAGCTAATGACATATTCAAGGACCTGGCTGTTCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGATACTTCCGCTGGTGCAACAACCCAAGCTAGAGTTCAGCTAGCTAAAGCTTCCAAAAATGTGAAATCTAGAACCTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTGGTGGTTCTGGTGATCTTACTTCTTGTACTGATTATTTAG 804 0.4677 MSFQDIQGGPNAPLRRSQPPSQAIAAGIFQINTSLATFRRLVDALGTVKDTPDHRHKLHNTRQRILQLVKDTSAKLKSLTQSDRDAASSNANKKIEDAKLVRDFQTTLQEFQKVQQLASERESTYTPTAPPSSFPTSSGSGEESVERDQESQPFIREQRRQEVLLLDNEISFNEAMIEEREQGIREVQEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDTSAGATTQARVQLAKASKNVKSRTSWCWWVLVIFVVVLVILLLVLII 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30277g00013 267 MobiDBLite consensus disorder prediction 115 142 - -
Stsc30277g00013 267 SUPERFAMILY t-snare proteins 21 229 IPR010989 GO:0016020|GO:0016192
Stsc30277g00013 267 PANTHER SYNTAXIN 22 255 IPR045242 -
Stsc30277g00013 267 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30277g00013 267 Pfam Syntaxin-like protein 24 125 IPR006011 GO:0016020
Stsc30277g00013 267 Gene3D - 14 130 - -
Stsc30277g00013 267 CDD SNARE_Qa 177 235 - -
Stsc30277g00013 267 MobiDBLite consensus disorder prediction 115 153 - -
Stsc30277g00013 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Stsc30277g00013 267 FunFam Syntaxin-22 like 167 267 - -
Stsc30277g00013 267 FunFam Syntaxin-22 like 15 129 - -
Stsc30277g00013 267 Pfam SNARE domain 211 262 IPR000727 -
Stsc30277g00013 267 SMART tSNARE_6 169 236 IPR000727 -
Stsc30277g00013 267 SMART SynN_4 8 123 IPR006011 GO:0016020
Stsc30277g00013 267 Gene3D - 168 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30277g00013 Stsc-Chr30277 108253 111511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30277g00013 1 254 SNARE and Associated Proteins AT5G46860 56.202 7.79e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30277g00013 - - aip:107604899 420.239