Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30276g00013 ATGTACTTGTCCACCATCTCTGATTTTCTTGAGGAAATATTAATGGAGAATCTCTATGGCTTCCACTACACATCACAAGACGAATACCACTCTTACTCTTACTCCCACCACCACACACCACCACCATCACCACCTTTTCTAAAACTACTTTCAACCACCACCAAACCTAATTTCTTGATGAAGCACCAACAAGTAGTAGTAGGAGAAGAGGATGATGATGAGGTTTCTAATATTGCAGCAAAAGTTAAAGTAGCTTCTCATCCACTTTTCCCCCAGCTTCTCCATGCTTATACCGATTGCCAAAAGGTGGGCGCAACGGCGGAGATGGTGGAGCAATTAGATGATACTATTATTGGCATACATCATCAAATACCTAACTACTTCTCTTCTTCTTATCTTCCTGATCCTGAGCTTGATCATTTCATGGAAATGTACTGCAATATGTTGGGAAAGTTGAAGGATGAAATTTCAAGACCTTTTGAAGAAGCAAAGACTTTCCTCAACCACATGGAAACAAAGCTCAACTCCATCGTCCTCTCCAACAACGTTGCTTCTTCTTCTTCTCCATCATCAGTTCTTCATCATGCTACACACAACATCATTGATAATGAAATAATTATTGGATCATCTAAAAAGTGTTTGCACAAGGAAAATGATGATGAGAAAGAGATAAATATTATTAATCAAGATCATCAAGACCTGAAGGGAGAGCTTCTACGAAGATATAGTGGGTACATTACTAATCTGAAGAATGAATTCTCCAAAAACAAGAAGAAAGAAAGGTTACCCAATGAAGCAAAGCAAATCTTACTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGGATGCAGATAAGGTTGCCCTAGCTGAATGGACTGGTCTTGATACAAAGCAGATAAACAACTGGTTTATTAACCAAAGAAAGCGCCATTGGAAACCAATAGAGGAATTGGAAACCACTATAGTTTTGGATGGTATCTATGGACCTCTTTGTATGACTCAGGAGTCCGAGTGTCAAAAATTCCCACACAGTGAAGATTCTCGTGGGTACAACCTCGAATAA 1071 0.3931 MYLSTISDFLEEILMENLYGFHYTSQDEYHSYSYSHHHTPPPSPPFLKLLSTTTKPNFLMKHQQVVVGEEDDDEVSNIAAKVKVASHPLFPQLLHAYTDCQKVGATAEMVEQLDDTIIGIHHQIPNYFSSSYLPDPELDHFMEMYCNMLGKLKDEISRPFEEAKTFLNHMETKLNSIVLSNNVASSSSPSSVLHHATHNIIDNEIIIGSSKKCLHKENDDEKEINIINQDHQDLKGELLRRYSGYITNLKNEFSKNKKKERLPNEAKQILLAWWNIHFKWPYPTDADKVALAEWTGLDTKQINNWFINQRKRHWKPIEELETTIVLDGIYGPLCMTQESECQKFPHSEDSRGYNLE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30276g00013 356 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Stsc30276g00013 356 SMART HOX_1 255 320 IPR001356 GO:0003677
Stsc30276g00013 356 Pfam KNOX1 domain 81 115 IPR005540 GO:0003677|GO:0005634
Stsc30276g00013 356 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Stsc30276g00013 356 Pfam ELK domain 233 254 IPR005539 GO:0003677
Stsc30276g00013 356 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Stsc30276g00013 356 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981|GO:0006355
Stsc30276g00013 356 Gene3D - 250 323 - -
Stsc30276g00013 356 Pfam KNOX2 domain 134 177 IPR005541 GO:0003677|GO:0005634
Stsc30276g00013 356 SUPERFAMILY Homeodomain-like 255 322 IPR009057 -
Stsc30276g00013 356 SMART ELK_2 137 157 IPR005539 GO:0003677
Stsc30276g00013 356 SMART ELK_2 233 254 IPR005539 GO:0003677
Stsc30276g00013 356 CDD homeodomain 257 316 IPR001356 GO:0003677
Stsc30276g00013 356 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Stsc30276g00013 356 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
Stsc30276g00013 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30276g00013 Stsc-Chr30276 68750 77498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30276g00013 71 327 Homeobox Transcription Factor Family AT1G23380 44.867 4.68e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc30276g00013 KNOX2 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30276g00013 - - ccaj:109811765 271.166