Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30276g00004 ATGGCTGATCCAACAACATCACCTGCTCCTCAAAAGCCTCAATCCTCTTCTTCTGATCTGAAAAGTGAAAAGAAAGATTATTCAACTGCGATTTTAGAACGAAAGAAGTCTCCGAATCGGCTTGTTGTGGATGAATCAATCAATGATGATAATTCAGTTGTCACTTTGCACCCTGACACCATGGAAAAGCTCAATCTTTTCCGGGGGGACACTGTTCTGGTTAAGGGGAAGAAGAGAAAGGACACTGTTTGCATTGTTCTTGCTGATGATCAGTGCGAAGAACCGAGAATTCGGATGAACAAAGTTGTAAGGTCTAATCTTAGGGTTAGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAAGCGAGTTCACATCCTTCCAATCGATGATACTATTGAGGGTGTTACCGGAAACTTGTTTGATGCATATCTAAAGCCATATTTTATGGAATCGTACCGGCCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGAGGCGGAATGCGAAGTGTTGAATTCAAGGTGATAGAAACTGATCCTGGTGAATACTGTATTGTGGCACCGGATACCGAAATCTTCTGCGAGGGAGAGCCGGTTAAACGCGAGGATGAAGAGAGACTAAATGAAGTTGGCTATGATGATGTTGGGGGTGTTAGGAAGCAAATGGCTCAGATTCGTGAGCTTGTAGAACTTCCACTTAGGCATCCGCAACTCTTCAAATCGATCGGTGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCGCCGGGTTCCGGGAAGACTCTGATTGCAAAAGCAGTTGCTAATGAGACAGGTGCATTCTTCTTTTTGATCAATGGGCCGGAAATCATGTCGAAGCTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCGTTTGAAGAAGCCGAAAAGAATTCCCCTTCTATCATCTTCATTGACGAATTGGATTCAATTGCTCCGAAAAGAGAGAAGACACATGGTGAGGTAGAGAGGCGTATTGTATCACAACTTTTAACTCTAATGGATGGCCTCAAGACCCGTTCGCATGTTATGGTGATCGGGGCAACAAATAGGCCCAATAGTATTGATCCTGCTCTGAGAAGGTTTGGAAGGTTTGATCGCGAAATTGATATCGGTGTACCTGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACTAAGAACATGAAACTTTCTGATAATGTTGATCTTGAAAGAGTTGCAAGGGACACTCATGGTTATGTCGGAGCAGACCTTGCTGCGCTATGCACAGAGGCTGCGCTGCAATGTATAAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAAACAATAGATGCTGAGATTTTGAATTCCATGGCTGTCACCAATGAGCACTTCCAAACTGCTTTGACTTCCTCGAACCCGTCTGCATTGCGTGAAACGGTTGTGGAGGTTCCGAATGTTTCCTGGGATGACATTGGAGGTCTAGAGAATGTTAAAAGGGAGCTTCAAGAGACAGTTCAATACCCGGTGGAACATCCGGAGAAGTTCGAGAAATTCGGCATGTCGCCTTCCAAAGGTGTTCTATTTTATGGCCCTCCGGGCTGCGGCAAAACCCTGCTTGCAAAAGCAATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTCAAGGGACCCGAGTTGCTTACTATGTGGTTCGGAGAAAGCGAGGCAAACGTCCGCGAGATTTTCGATAAGGCCCGGCAGTCTGCCCCGTGTGTGCTTTTCTTCGATGAACTCGACTCTATTGCAACCCAGCGAGGAAGTTCGACAGGGGATGCTGGGGGCGCTGCCGATAGAGTGTTGAACCAACTACTTACAGAAATGGATGGAATGTCTGCTAAGAAAACGGTTTTTATCATTGGAGCAACAAACAGACCGGACATTATAGACCCTGCGTTGCTTCGGCCGGGACGACTCGACCAATTGATATACATTCCTTTACCAGATGAGAATTCGCGTTTTCAGATCTTTAAGGCATGCTTGAGGAAGTCACCAATATCGAAGGATGTCGATCTTTCGGCTCTTGCCTGTTACACTCATGGATTTAGTGGTGCAGACATTACTGAGATTTGTCAAAGAGCTTGCAAGTATGCCATTAGAGAAGATATTGAGAAGGGCATTGAGATGGAGAGAAGAAAAAGAGAGAACCCTGAAGCCATGGAAGAAGATACTGAAGACACTGAAGATGCAGTGGCTGAGATAAAGCCATCACACTTTGAGGAGTCCATGAAGTTTGCCCGGAGGAGTGTCAGCGACGCCGACATCAGAAAATACCAACTGTTTGCTCAGACATTGCAACAATCTCGCGGGTTCGGATCAGAATTCCGGTTCGCAGATAGGAGTACTGATCATAACCCTACTGCTGCAGCTGGTGCCTCTGACCCTTTCTCATCTGTTACAGCTGAAGGAGATGATGATCTATATAGTTGA 2472 0.4551 MADPTTSPAPQKPQSSSSDLKSEKKDYSTAILERKKSPNRLVVDESINDDNSVVTLHPDTMEKLNLFRGDTVLVKGKKRKDTVCIVLADDQCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVMVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRFQIFKACLRKSPISKDVDLSALACYTHGFSGADITEICQRACKYAIREDIEKGIEMERRKRENPEAMEEDTEDTEDAVAEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRSTDHNPTAAAGASDPFSSVTAEGDDDLYS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30276g00004 823 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Stsc30276g00004 823 FunFam Cell division control 48 123 219 - -
Stsc30276g00004 823 FunFam Transitional endoplasmic reticulum ATPase 216 384 - -
Stsc30276g00004 823 SMART CDC48_2_2 140 206 IPR004201 -
Stsc30276g00004 823 Gene3D - 123 219 - -
Stsc30276g00004 823 Gene3D - 478 661 IPR027417 -
Stsc30276g00004 823 Gene3D - 220 384 IPR027417 -
Stsc30276g00004 823 Gene3D - 665 776 - -
Stsc30276g00004 823 Pfam ATPase family associated with various cellular activities (AAA) 255 384 IPR003959 GO:0005524|GO:0016887
Stsc30276g00004 823 Pfam ATPase family associated with various cellular activities (AAA) 528 661 IPR003959 GO:0005524|GO:0016887
Stsc30276g00004 823 SUPERFAMILY ADC-like 36 120 IPR009010 -
Stsc30276g00004 823 CDD RecA-like_CDC48_r2-like 499 659 - -
Stsc30276g00004 823 PANTHER AAA-FAMILY ATPASE 413 782 - -
Stsc30276g00004 823 Pfam AAA+ lid domain 683 724 IPR041569 -
Stsc30276g00004 823 Pfam AAA+ lid domain 407 449 IPR041569 -
Stsc30276g00004 823 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30276g00004 823 SMART CDC48_N_2 40 123 IPR003338 -
Stsc30276g00004 823 Pfam Cell division protein 48 (CDC48), domain 2 142 205 IPR004201 -
Stsc30276g00004 823 FunFam Cell division control 48 386 477 - -
Stsc30276g00004 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 777 IPR027417 -
Stsc30276g00004 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 476 IPR027417 -
Stsc30276g00004 823 SUPERFAMILY Cdc48 domain 2-like 122 214 IPR029067 -
Stsc30276g00004 823 ProSitePatterns AAA-protein family signature. 631 649 IPR003960 GO:0005524|GO:0016887
Stsc30276g00004 823 Gene3D - 386 477 - -
Stsc30276g00004 823 CDD RecA-like_CDC48_r1-like 219 384 - -
Stsc30276g00004 823 FunFam Transitional endoplasmic reticulum ATPase 478 661 - -
Stsc30276g00004 823 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30276g00004 823 SMART AAA_5 524 663 IPR003593 GO:0016887
Stsc30276g00004 823 SMART AAA_5 251 387 IPR003593 GO:0016887
Stsc30276g00004 823 Gene3D - 17 122 - -
Stsc30276g00004 823 MobiDBLite consensus disorder prediction 790 823 - -
Stsc30276g00004 823 FunFam Transitional endoplasmic reticulum ATPase 17 122 - -
Stsc30276g00004 823 Pfam Cell division protein 48 (CDC48), N-terminal domain 40 121 IPR003338 -
Stsc30276g00004 823 NCBIfam CDC48 family AAA ATPase 45 780 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30276g00004 Stsc-Chr30276 7970 11558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30276g00004 457 742 Calmodulin-binding Proteins AT3G56690 46.853 1.50e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30276g00004 K13525 - gmx:100798680 1496.87