Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30275g00020 ATGGCAAAGATCAAGGTGATCTTCCGCCGATTAGCCAAATATTCAAGCCTGAGAGATGAATATTTACAGAATGAACCTGTTGTTGGGATTGAATATGAGACTCAGCTCCAAAAGACCCTTCTGCCGCGTGAGCACGATGTGGCAAATCTGGACTATCCAAATATTGCAGCTACTGAACCAATTTTGTCTAATGGCATGCGGATCTGCTACAACTGTACTGGCTTTCTTGATCACCAGGATATTCATATGGAGGCTTGTCTCAGCTCCCAGATGGCGATTTTTTCTCTTGCTCTATGGATATGCATGCGGACAAGAGAGTTGATTTTGGTACCAAGATTGGGGCATACAGGAGAATTTTTTTCTGGCGACTTCTCAGCTACTGACCTGGAAACTGCTTTGCAGGTATCCGTTTGTGATATGGCAGGAACATATTCTGAATGCCCTGTATGGTTTTCGGTGTATGGGAATGAATGGGGAGCCTTGGAGCAACGGGTTTTCACCCTTCTGGAAAGAAGGGGGAGCCTTGGAGCAACTGTTGAGTTGTTTTTGGGTGACGTCAAGGTCACGGGATTAACCGTGGTGACAGCCCCTGATGTGATTATCGTGTTAGGCTGCATACATTACACGCTCGGGGTGATGCCCTTCCCCGACCTTGCATTAACCTGGGATGCTTGCCTTTGCTCTGGGAGGTTTGATGGTATTGATACGCATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGACTAGATGGAATTCAGGGTCCCGTATATGTGGGCACTGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAGGGTCCTAAGCGTCCGAAAATGGTGAGTTGTGACTGTTGCCCTTGTTTCGGAAAGCGTAACAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAACCTTAAACCAATGGAAGATGACAAAGAGTTACTGATGTCCCAAATGAATTTTCAGAAGAAATTTGGACAATCATCTATTTTTGTGACTTCAACTTTGATGGAAGATGGTGGTGTGCCTCCTTCTTCAAGTCCAGCAAGACAGCTTAAAGAAGCCATTCATGTAATTAGCTGTGTTTATGAAGATAAAACCAAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCCATTACAGAGGATATTCTGACAGGTTTCAAGATGCATTGTTGTGGTTGGAGATCCATTTACTGCATGCCAAGGAGAACGGCTTTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGTTTTTAACCAGGTGCTTCGTTGGGCGCTTGAATCCATTGAGATCTTCTTCCGTCACCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAA 1389 0.4478 MAKIKVIFRRLAKYSSLRDEYLQNEPVVGIEYETQLQKTLLPREHDVANLDYPNIAATEPILSNGMRICYNCTGFLDHQDIHMEACLSSQMAIFSLALWICMRTRELILVPRLGHTGEFFSGDFSATDLETALQVSVCDMAGTYSECPVWFSVYGNEWGALEQRVFTLLERRGSLGATVELFLGDVKVTGLTVVTAPDVIIVLGCIHYTLGVMPFPDLALTWDACLCSGRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRNKAKHAKNDAIAEAANLKPMEDDKELLMSQMNFQKKFGQSSIFVTSTLMEDGGVPPSSSPARQLKEAIHVISCVYEDKTKWGIELGWIYGSITEDILTGFKMHCCGWRSIYCMPRRTAFKGTAPINLSDRFLTRCFVGRLNPLRSSSVTIARYGMATRKGS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30275g00020 462 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 432 - -
Stsc30275g00020 462 Pfam Cellulose synthase 229 432 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30275g00020 Stsc-Chr30275 102794 108964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30275g00020 230 432 Cell Wall Biosynthesis AT5G17420 82.353 1.56e-113 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30275g00020 K10999 - gmx:100789821 385.571