Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30275g00004 ATGTTTTTCTTAGTTTCTGGTTTGCTAACCGATATCTTGACCAAGGTAGATTCTGCTACCTACAATGAGATTTCACTCTTATGGGGTCTCAAAGATGAAATTGACACCCTTAAGAACTCTCTCAGATTCATCAATGCTTTCATTTTGGATGCTGAGAACAAGCAAACAGAAAGTAAGAGCATCATGGTGTGGCTGCAGCAGCTCAGGGATTCTTTCTTTGATGCTCGTGACATCTTGGATGAGATTGAATGTGAAGCACTCAGGAACAAGGTTGTGAAGACTCAAGGGAGCTTCAAAAGAAAGGTAAAGCGCTTCTTCTCACTCTCTAACCCTCTAGCATTTCGTATTCAGATGGCTCATAAGATCAAGAAAATTAAGAAGAGTATAGATGAATTAGGTACTCTTAGGATGCAATTTGGTCTCTCAGAGATTCATGCAAGTAGTAGTAGTAGTAATGTTCATGTTCCAAAGTTGGATTGGAGGGAGACTAAATCTTCTGTTAGGCCTTCTGATGTGATTGGTAGAGATGAGGAGAAAGACAAGATCGTTGGTTTATTGATGGTTCCACCATCAGATTGTGGTAATGATGAGATTATTGATGTTATTCCAATTGTTGGAATTGGAGGTTTGGGGAAGACCACAATTGCACAGCTAGTGTACAATGATGATAGGGTGATCCAGAATTTCGAACTGCGAATGTGGGTGTTTGTTTCTGATGATTTTGATGTTAAGAGGTTGGCATTAGAGATTCTTAAGGCTATGCCTGGAATAGATATAGATGCCCATCACAATTATAGTTATGATCAGTTACAGAATTTGCTGCGCGAGGAACTAGTTGGCAAGAAGTTTCTGCTTGTTCTTGATGATGTTTGGAATGAAGATTATAGAGCCTGGAGCGAGTTGAGAAATCTGTTAGTAGGAATGCATGATAATGAAAATAACCGAATTGGAAGCAAGATTATCGTGACAACTCGTAGTGATAAGGTTGCTTCGATCATGGGGAAAGCTTATAAACTGCTATATCTTCCTGATGAAGATTGTCTGAAGCTATTTCTCAGGTGTGCATTTCAAGCAGGAGAGGGAAACCAGTACCCTAGGCTTGTGGAAATTGGGAAGGAGATTGTTAGAAAGTGCAAAGGGTTGCCCCTGGCAGTGGTGAGTTTAGGGTGCATGCTTCGCTCAGAACATCGAGAAAATGCGTGGAAGAAAGCTAGAGATAGTGAAATTTGGAAAACAGACCAACAAAAAGATGGGATTTTGGCTGCATTGAGACTGAGCTATAATCACCTGCCATCTGAATTGAAGAGGTGTTTCTCCTATTGTTCAGTTTTCCCTAAGGGTCATGAGTATAGCAATTTGGAGCTGATATCATTTTGGATGGCACATGGACTACTACAAAGCAACAATGAAGATGAAGAGGCAGAAGATCTTGGAGAGTTCTATATTCAAGAGTTAGTTTCAAAATCTTTCTTTGAAGGTGTTCCCGAAGATCAAGTAGTTGTTGATGGCCTTATTTTTGAAGAACTTAAGCATCTCGGAATATCTTACTTTAAGATGCATGATCTTATTAATGACCTTGCTGTGTCCACTATGCAAAATGAAAGGGCTGCGGTAAAGTTCAATTCAACTAATGTGAGAGAAAATGTGCACCATTTATCATTTTCTGAGAGTAGAGAAGGAGTACCTAATTTTGGTAATAAAATGTTGAGTAAGGTCCAAACCATTGGATTCTGGCATGCAAGTGAAAGTGCAAGTGCAATCACTGGACCATTTCTTAGATGGGTTTCTAAGGAATTAAGGTACCTCAGGGTGTTGAATCTACAAAGTTCAAATTTTCAGTTCTTGCCTGATTGTTTCAACAAGATGAAGCATTTGAGGTATCTTAATCTGAGTTATTGCCAAAGGATGGAAAAACTACCAGATTCCATTTGCAAGCTGCAGAACTTGGAAGTTCTTAATCTGTGTAGATGTGTAGCACTTAAATACATTCCCAAAAACTTGAGGAATCTTGTGAGCCTTAGAATTTTGTGGATCACCACACAAGTGAATGATTTGTCTTATATAGGTTTCAAGACCTTCAGTTCTTTGCAAATCTTGATTTTGTGGAATTGTGAAAACTTAGCATTCCTTCCACATGATTTGGGGCACTTAACTGCTTTGAAAAGGCTTAGCATTGAGGCTTGTCTTGAGGTGACTCATTTTGGAGATGAAGGTGAACAAGAAATTGAAGACGACTATTCCTTGAAACTTGAACAATTCTCAATCAACCAACTACCAGAATTGTTAGCATTGCCAAATTGGCTGAGAAGATGTTCTAAGACTCTCAGATATCTGGGCCTTTCACAGTGTCAGAGCTTAACAACATTTCCAGAATGGTTGCCAGTTCTGACATCACTTGAAACCCTTCTAATTGCTGATTGTCCAAAATTAGCACTGCCACATAATATTGATAGTGTTCATAACCTTCAGAATTTGAAGATATTTGGATGCCCTCAGCTAGTTGAGAAATGCAAAAGAGATACAGGACCTGATTGGTGTAAAATATCTCATATCCCAAATGTTGAACTTGAAAGCGTTTAG 2580 0.3899 MFFLVSGLLTDILTKVDSATYNEISLLWGLKDEIDTLKNSLRFINAFILDAENKQTESKSIMVWLQQLRDSFFDARDILDEIECEALRNKVVKTQGSFKRKVKRFFSLSNPLAFRIQMAHKIKKIKKSIDELGTLRMQFGLSEIHASSSSSNVHVPKLDWRETKSSVRPSDVIGRDEEKDKIVGLLMVPPSDCGNDEIIDVIPIVGIGGLGKTTIAQLVYNDDRVIQNFELRMWVFVSDDFDVKRLALEILKAMPGIDIDAHHNYSYDQLQNLLREELVGKKFLLVLDDVWNEDYRAWSELRNLLVGMHDNENNRIGSKIIVTTRSDKVASIMGKAYKLLYLPDEDCLKLFLRCAFQAGEGNQYPRLVEIGKEIVRKCKGLPLAVVSLGCMLRSEHRENAWKKARDSEIWKTDQQKDGILAALRLSYNHLPSELKRCFSYCSVFPKGHEYSNLELISFWMAHGLLQSNNEDEEAEDLGEFYIQELVSKSFFEGVPEDQVVVDGLIFEELKHLGISYFKMHDLINDLAVSTMQNERAAVKFNSTNVRENVHHLSFSESREGVPNFGNKMLSKVQTIGFWHASESASAITGPFLRWVSKELRYLRVLNLQSSNFQFLPDCFNKMKHLRYLNLSYCQRMEKLPDSICKLQNLEVLNLCRCVALKYIPKNLRNLVSLRILWITTQVNDLSYIGFKTFSSLQILILWNCENLAFLPHDLGHLTALKRLSIEACLEVTHFGDEGEQEIEDDYSLKLEQFSINQLPELLALPNWLRRCSKTLRYLGLSQCQSLTTFPEWLPVLTSLETLLIADCPKLALPHNIDSVHNLQNLKIFGCPQLVEKCKRDTGPDWCKISHIPNVELESV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30275g00004 859 Gene3D - 341 431 IPR042197 -
Stsc30275g00004 859 Pfam Rx N-terminal domain 10 97 IPR041118 -
Stsc30275g00004 859 PRINTS Disease resistance protein signature 201 216 - -
Stsc30275g00004 859 PRINTS Disease resistance protein signature 378 392 - -
Stsc30275g00004 859 PRINTS Disease resistance protein signature 277 291 - -
Stsc30275g00004 859 PRINTS Disease resistance protein signature 620 636 - -
Stsc30275g00004 859 SUPERFAMILY L domain-like 518 849 - -
Stsc30275g00004 859 Gene3D Ribonuclease Inhibitor 567 736 IPR032675 -
Stsc30275g00004 859 Gene3D - 160 340 IPR027417 -
Stsc30275g00004 859 Pfam NB-ARC domain 199 428 IPR002182 GO:0043531
Stsc30275g00004 859 Gene3D Ribonuclease Inhibitor 746 840 IPR032675 -
Stsc30275g00004 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 441 IPR027417 -
Stsc30275g00004 859 PANTHER DISEASE RESISTANCE PROTEIN RP 56 826 IPR044974 GO:0006952
Stsc30275g00004 859 Gene3D - 9 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30275g00004 Stsc-Chr30275 12033 15024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30275g00004 199 833 WRKY Transcription Factor Family AT5G45050 22.174 5.13e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30275g00004 - - mtr:25493373 1160.21