Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30275g00002 ATGGCAAGCCATATTGACTCCCTTGAAAGAAAGGGTGAGGATGAAGATGACAATGATGTTAAAGACAATGCTGATGAAGAAAACCCAGAGGCAGATAAGGATGCAGCTGATGCTGATGATCATAGAGAGGAAGGAGAGTACTTACTAGGAGATGACGGCACAACTGCAGAGGAACTTCATGAAGGTCTGCTCATAAAAGATGGAGATGAAAATAGCAAGCATTTTGCTCGACATTTCAGCCATGGATATCACTTGACCGAAGGAAAGTTGAACCATGGAATGGAGGACTACATTTTTGCTCAACATAAGAAGCTCAACGGTTATGACTTGGGATTGTATGCAATATTTGATGGACATTCAGGTCATGATGTTGCCAAATACTTGCAAAGCCATCTATTTGAAAATATACTGAATGAGCCTAGTTTCTGGGAGAAACCAGTGCATGCTGTTAAGAAAGCCTGCAAGGCTACAGACAATGAGATCTTAGAGAATATAGCAGATTCGCGGGGAGGATCAACAGCCGTTGCAGCAATACTAATTGACGGAGTGAAGCTGCTTGTAGCCAATGTTGGCGATTCTCGAGCGATATCATGCAAAAATGGCATTGCAAAACCAATAACTGTGGATCATGAACCAGAGAAGGAGAAAGATCTTGTTGAAAGCAGAGGGGGCTGTGTGTTCACAAGACCAGGAGATATTCCAAGAGTGGACGGCCAATTAGCAATGACAAGAGCATTTGGAGATGGAAAACTGAAGGAGCACATTACTTCAGAGCCAGATGTGATGATCCGGAAGATTGATGATGACACTGACTTCATCATCTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAGGATGCTTGTGACTGTATCAAAGATGATGTTGATGATGCTAAGAAAGCTGCTAAGAAGTTAGTTGAAGAAGCCAAGTCTCTAGGAAGCTATGATGATATTTCATGCATAGTTGTTACTTTCTAG 984 0.4228 MASHIDSLERKGEDEDDNDVKDNADEENPEADKDAADADDHREEGEYLLGDDGTTAEELHEGLLIKDGDENSKHFARHFSHGYHLTEGKLNHGMEDYIFAQHKKLNGYDLGLYAIFDGHSGHDVAKYLQSHLFENILNEPSFWEKPVHAVKKACKATDNEILENIADSRGGSTAVAAILIDGVKLLVANVGDSRAISCKNGIAKPITVDHEPEKEKDLVESRGGCVFTRPGDIPRVDGQLAMTRAFGDGKLKEHITSEPDVMIRKIDDDTDFIILASDGLWKVMTNQDACDCIKDDVDDAKKAAKKLVEEAKSLGSYDDISCIVVTF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30275g00002 327 Coils Coil 290 310 - -
Stsc30275g00002 327 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30275g00002 327 PANTHER PROTEIN PHOSPHATASE 40 325 IPR015655 GO:0004722|GO:0006470
Stsc30275g00002 327 SMART PP2C_4 70 325 IPR001932 -
Stsc30275g00002 327 CDD PP2Cc 79 327 IPR001932 -
Stsc30275g00002 327 MobiDBLite consensus disorder prediction 34 53 - -
Stsc30275g00002 327 ProSiteProfiles PPM-type phosphatase domain profile. 80 327 IPR001932 -
Stsc30275g00002 327 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30275g00002 327 Gene3D - 65 327 IPR036457 -
Stsc30275g00002 327 SUPERFAMILY PP2C-like 74 327 IPR036457 -
Stsc30275g00002 327 FunFam Probable protein phosphatase 2C 39 72 327 - -
Stsc30275g00002 327 MobiDBLite consensus disorder prediction 18 33 - -
Stsc30275g00002 327 Pfam Protein phosphatase 2C 92 319 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30275g00002 Stsc-Chr30275 4935 6464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30275g00002 67 327 PP2C-type Phosphatase Gene Family AT3G15260 57.634 6.91e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30275g00002 - - gmx:100814772 446.047