Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30273g00023 ATGAGGAGAAATTGCAATCTGGAACTTGGGCTCTTTCCTCCCTCCTTTGATTCCGGACACACCCCAAACCAAGAAGACGAACAACGCCAGATTACGATTTTCTACGACGGAAAGATTGCTGTTTCTCATGTTACAGACCTTCAGGCCAAATCAATCTTAATGCTTGCAAGTAACAAGGCCAATATTATTAGGACACCACCAACAACAACGGGATCATCATCATCATCAGACCCATCTTCATCTTCATCATCATTATTACTTCACCAACAACCCCATAATAATAATAATAATAATAATAATAATAATAATACCACCACCACTACTACTGGCACTGGACTTTCCATGAAAAGATCACTGCAAAGGTTCCTACAGAAGAGAAAGAATCGAATACAAGAAGCTTCCCCTTACCACCATCACTAG 420 0.4 MRRNCNLELGLFPPSFDSGHTPNQEDEQRQITIFYDGKIAVSHVTDLQAKSILMLASNKANIIRTPPTTTGSSSSSDPSSSSSSLLLHQQPHNNNNNNNNNNNTTTTTTGTGLSMKRSLQRFLQKRKNRIQEASPYHHH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30273g00023 139 Pfam tify domain 26 57 IPR010399 -
Stsc30273g00023 139 Pfam Jas motif 116 136 IPR018467 -
Stsc30273g00023 139 ProSiteProfiles Tify domain profile. 24 58 IPR010399 -
Stsc30273g00023 139 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 21 137 IPR040390 -
Stsc30273g00023 139 MobiDBLite consensus disorder prediction 63 115 - -
Stsc30273g00023 139 SMART tify_2 24 58 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30273g00023 Stsc-Chr30273 131011 133029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30273g00023 1 137 Tify Gene Family AT1G30135 39.073 2.24e-22 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc30273g00023 tify 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30273g00023 - - gmx:100305565 109.383