Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30273g00017 ATGCTCAACCTCATCTTATCTGCAAAGGACTTGTATAGCAGATCAGTGCTGTATTTGTACATCAGTGAGGTGGTCTGCCAGGCTCTGTTTGGACTACTTTTGCTGGTGTATTTACCTACTTTGGATCCTTATCCGGGTTATACCCCTGTTCGGAGTGACTTGGTTATTGATACTGCATATGAAGAACTGCCTGGAGGAGAGCAGATATGTCCTGAGAGGCATGCGAACATATTGTCAAAAATCCTTTTTTCTTGGATGAATCCTATCATGAAACTAGGATATCAAAGACCCCTTACAGAGAAAGATATATGGAAGTTAGATACATGGGATCGGACTGAAACACTGAATAATAAGTTCCAGAGATGCTGGGCAGAAGAGTCTCGGAGGTCAAAACCTTGGCTTTTAAGAGCATTGAATGCAAGCCTTGGTGGAAGGTTTTGGTGGGGAGGATTTTGGAAGATTGGAAATGATCTCTCCCAATTTTCGGGCCCTCTTATATTGAATCAGCTGCTATTGTCTATGCAAAATGATGATCCAGCCTGGATTGGCTACGTTTTTGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATACTTTCAGAATGTCATGCGTGTTGGATTCCGGCTAAGGTCAACACTGGTAGCTGCTGTATTTCGCAAGTCATTAAGGCTTACCCATGAAGCTCGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCAGAAGCACTTCAGCAAATAAGCCAGTCACTTCATACTTTATGGTCAGCTCCATTTCGCATTACCATTGCCATGGTTCTTCTTTATCAACAACTTGGTGTTGCTTCCCTGTTGGGTGCTTTGATGCTAGTCCTTATGTTTCCATTACAGACATTTATCATCAGTAGAATGCAGAAATTGTCCAAGGAAGGATTACAACGTACAGACAAGAGAATTGGCCTTATGAATGAAGTTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTTCAGAATGTCCGAAATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTGAATGGATTCATATTGAATAGTATTCCAGTTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGTGGGAATTTGACACCTGCGAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCGGTTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGCTGTTAATGCAAATGTATCGTTGAAGCGTTTGGAGGATTTGCTCTTAGCTGAAGAGAGAATACTTTTACCAAATCCACCACTTGAGCCAGGATTACCAGCCATCTCAATAAAAAATGGAAACTTCTCTTGGGATTCCAAGGCAGATAAGCCAACATTGGAAAACATAAACTTGGATATACCCGTTGGTAGCCTAGTTGCAGTTGTTGGCAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTGGGAGAACTCCCTGCAGTTGCAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTTACGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTGCGGGATAATGTTTTATTTGGTTCTGCCTTTGATCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCGAAATTGGCGAAAGAGGTGTGAACATCAGTGGTGGCCAAAAGCAAAGAGTATCCATGGCTAGAGCTGTCTACTCCAAATCTGATGTGTACATCTTTGATGATCCTCTTAGTGCCCTAGATGCACATGTTGCTAAACAGGTTTTTGATAAATGCGTCAAGGGAGAACTGAGAGGGAAGACCCGAGTCCTTGTTACAAATCAACTGCACTTCCTTTCACAGGTGGATAGAATCATTTTGATCCATGAAGGTACTGTTAAAGAGGAGGGAACGTTTGAGGAGCTCTCTAGCCAAGGGCCGTTGTTCCAAAAGCTTATGGAAAATGCTGGAAAGATGGAGGAGTACGAAGAAGAGAAGCTAGATACTGAAACTGCTGATCCAAAGTCCTCTTCAAAACTGGAGGCCAATGGAGAAATCAGTGATACTGCAAAGAGTGGAAGTAAGGCAAAAGAAGGAAAATCGGTCCTTATTAAACAGGAAGAGCGAGAAACAGGCGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGAATGCATTAGGAGGCCTTTGGGTGGTTTTAATACTCTTTGGATGCTATTTCCTAACGGAAGCCTTACGAATTTCGAGTAGCACATGGTTGAGCTACTGGACTGATCAGAGTGTTTCAGAGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTGATCATATCAAGTCTACATGCTGCCAGGAGGTTGCATGAAGCCATGCTTCACTCCATATTACGAGCTCCGATGGCTTTTTTCCATACGAATCCACTTGGAAGAGTAATCAACAGGTTTGCAAAGGATTTAGGTGACATCGATCGTAATGTTGCCCCATTTGTCAATATGTTTCTGGGTCAAGTGTTTCAGCTCCTTTCAACCTTCGTCCTGATAGGGATTGTCAGCACAATGTCCTTGTGGGCAATAATGCCATTGTTGGTACTGTTTTATGGAGCATATCTGTACTATCAGAGCACAGCCCGTGAAGTAAAGCGCTTAGATTCAATTAGCAGATCCCCTGTTTATGCACAATTTGGGGAAGCACTTAATGGTCTATCAACAATTCGCGCTTACAAGGCTTATGACCGCATGGCTGATATCAACGGGAGGTCTATGGACAACAACATACGATTCACTCTTGTGAACATGAGCGGAAATCGATGGCTTGCAATTCGATTGGAAACTCTGGGAGGTCTCATGATATGGTTTACTGCAACCTTTGCAGTATTGCAGAATGGGAGGGCAGATAACCAGCAGGAATTTGCATCCACCATGGGGTTACTACTTAGTTATGCTTTGAACATAACCAGTTTGCTTACTGGTGTGCTCAGGCTTGCTAGTTTGGCTGAGAATAGTCTAAATGCTGTTGAGCGTGTTGGCACTTATATAGATTTGCCTTCAGAGGCTCCATCCATCATTGAGGATAGTCGCCCCCCTCCAGGCTGGCCCTCATCTGGATCAATCAGATTTGAGGATGTTGTACTTCGATACAGGCCTGAACTTCCTCCTGTCCTTCATGGCTTGAATTTCACAATTTTTCCAAGTGATAAGGTTGGCATCGTAGGAAGGACAGGAGCAGGAAAATCTAGCATGCTTAATGCTTTATTTCGAATAGTAGAATTGGAAAGAGGAAGAATATTAATTGATGATTGTGATATTGCAAAGTTTGGGCTGGCTGATTTGCGTAAAGTTCTTGGCATTATACCACAGTCCCCTGTTTTGTTTTCAGGAACTGTGAGATTTAATCTTGACCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATTCGGAGGAATTCTTTGGGATTGGATGCTGAGGTCTCTGAGGCAGGTGAGAACTTCAGTGTTGGGCAGAGGCAACTGTTGAGTCTTTCTCGAGCATTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCCACTGCAGCAGTTGATGTTAGAACGGATGCCCTCATACAGAAAACAATTCGAGAGGAATTTAAATCATGCACAATGCTCATCATTGCTCATCGTCTTAACACCATTATAGACTGTGATCGGATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAACTGCTATCATATGAAGGCAGTTCGTTCTCTAAGATGGTGCAAAGTACAGGAGCCGCAAATGCTCAATATCTACGCAGCTTAGCACTCGGGAGTAAGTCAGATCGGGAAGAGAGTAAGCATAATGATGGCCAGAAAAAATGGCTTGCTTCATCTCGCTGGGCTGCTGCAGCCCAATTTGCCCTTGCTGTCAGTCTCACCTCATCACAGAATGACCTAAAAAGATTGGAAGTGGAAGAAGAGAACAGTATACTCAAGAAAACAAGGGATGCTGTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAGAGAAATCGAAGAATCTTTAGACCGGTACCAAATGTCCCCAGACAGTTGGTGGTCATCACTCTACAAGATGATTGAAGGTCTTGCAATGATGAGTAGACTGGCCAGGAGCAGGCTTAATCAATCAGAATTCGATTTTGACGACGACAGATCAATTAACTTTGATCAAGCCCATATGTAG 4389 0.4254 MLNLILSAKDLYSRSVLYLYISEVVCQALFGLLLLVYLPTLDPYPGYTPVRSDLVIDTAYEELPGGEQICPERHANILSKILFSWMNPIMKLGYQRPLTEKDIWKLDTWDRTETLNNKFQRCWAEESRRSKPWLLRALNASLGGRFWWGGFWKIGNDLSQFSGPLILNQLLLSMQNDDPAWIGYVFAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAEALQQISQSLHTLWSAPFRITIAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEVLAAMDTVKCYAWESSFQSKVQNVRNDELSWFRKASLLGALNGFILNSIPVFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGNFSWDSKADKPTLENINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPAVAGSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSKSDVYIFDDPLSALDAHVAKQVFDKCVKGELRGKTRVLVTNQLHFLSQVDRIILIHEGTVKEEGTFEELSSQGPLFQKLMENAGKMEEYEEEKLDTETADPKSSSKLEANGEISDTAKSGSKAKEGKSVLIKQEERETGVVSMKVLARYKNALGGLWVVLILFGCYFLTEALRISSSTWLSYWTDQSVSEGYDPGFYNLIYAALSFAQVMVTLTNSYWLIISSLHAARRLHEAMLHSILRAPMAFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVFQLLSTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWFTATFAVLQNGRADNQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPSIIEDSRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLNFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSYEGSSFSKMVQSTGAANAQYLRSLALGSKSDREESKHNDGQKKWLASSRWAAAAQFALAVSLTSSQNDLKRLEVEEENSILKKTRDAVITLQGVLERKHDREIEESLDRYQMSPDSWWSSLYKMIEGLAMMSRLARSRLNQSEFDFDDDRSINFDQAHM 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30273g00017 1462 MobiDBLite consensus disorder prediction 688 721 - -
Stsc30273g00017 1462 CDD ABC_6TM_ABCC_D2 759 1055 IPR044726 GO:0140359
Stsc30273g00017 1462 Pfam ABC transporter 476 611 IPR003439 GO:0005524
Stsc30273g00017 1462 FunFam ABC transporter C family member 2 122 443 - -
Stsc30273g00017 1462 CDD ABCC_MRP_domain1 458 659 - -
Stsc30273g00017 1462 CDD ABCC_MRP_domain2 1078 1298 - -
Stsc30273g00017 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 147 426 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30273g00017 1462 CDD ABC_6TM_ABCC_D1 148 434 IPR044746 GO:0140359
Stsc30273g00017 1462 ProSitePatterns ABC transporters family signature. 584 598 IPR017871 GO:0005524|GO:0016887
Stsc30273g00017 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 682 IPR003439 GO:0005524
Stsc30273g00017 1462 MobiDBLite consensus disorder prediction 703 717 - -
Stsc30273g00017 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1071 1306 IPR027417 -
Stsc30273g00017 1462 Pfam ABC transporter 1097 1245 IPR003439 GO:0005524
Stsc30273g00017 1462 Pfam ABC transporter transmembrane region 759 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30273g00017 1462 Pfam ABC transporter transmembrane region 150 414 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30273g00017 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1080 1314 IPR003439 GO:0005524
Stsc30273g00017 1462 Gene3D - 453 708 IPR027417 -
Stsc30273g00017 1462 FunFam Multidrug resistance-associated protein member 4 1064 1316 - -
Stsc30273g00017 1462 FunFam ABC transporter C family member 2 723 1061 - -
Stsc30273g00017 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 72 1320 - -
Stsc30273g00017 1462 Gene3D ABC transporter type 1, transmembrane domain 722 1061 IPR036640 GO:0005524|GO:0016020
Stsc30273g00017 1462 Gene3D ABC transporter type 1, transmembrane domain 117 444 IPR036640 GO:0005524|GO:0016020
Stsc30273g00017 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 760 1043 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30273g00017 1462 SUPERFAMILY ABC transporter transmembrane region 132 434 IPR036640 GO:0005524|GO:0016020
Stsc30273g00017 1462 Gene3D - 1063 1316 IPR027417 -
Stsc30273g00017 1462 SMART AAA_5 485 659 IPR003593 GO:0016887
Stsc30273g00017 1462 SMART AAA_5 1106 1299 IPR003593 GO:0016887
Stsc30273g00017 1462 MobiDBLite consensus disorder prediction 688 702 - -
Stsc30273g00017 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 681 IPR027417 -
Stsc30273g00017 1462 SUPERFAMILY ABC transporter transmembrane region 756 1060 IPR036640 GO:0005524|GO:0016020
Stsc30273g00017 1462 ProSitePatterns ABC transporters family signature. 1217 1231 IPR017871 GO:0005524|GO:0016887
Stsc30273g00017 1462 FunFam ABC transporter C family member 2 452 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30273g00017 Stsc-Chr30273 74109 86514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30273g00017 1077 1320 Calmodulin-binding Proteins AT2G36910 30.800 7.84e-29 124