Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00011 ATGGCTCCCAAGAGAGATACTCACTCCGACAGCGACGAAGACGACATCTTCTACTACCGCTTCTGCTCTTCTTCCTCCGCCTCCACCCAACCCCAGGCCCAACCCCAAGCCCAAGCCCAAGCCCACACCAACAACATCACTGGTTCTGCCGGGGGATCCTCTTCTTCTTCTTCTTCTCTGGCTCCCTCAAAATCAACCATTTACGTTTCCAACCTCGACTACTCCCTAACCAACTCCGACCTCCACACACTCTTCTCCACCTTCGGCCGCATCGCCCGCGTTACCGTCCTCAAAGACCGTCACACCCGCCTCAGCCGCGGCGTCGCCTTCATCCAATTCGTCACCCGAGACGACGCCCGCCGCGCCGCCGATCAAATGCACGGCAAGATCCTCAACGGTCGCACGCTCTCCGCCTCTATCGCCGTCGACAACGGCCGCGCTCCTGAGTTTATTCGCAAGCGCGTCTACAAGGACACCGGCCGCTGCTTCGAGTGCGGCCAGTCCGGACACCTCTCCTACGACTGTCCCCGGAATCGCCTCGGTCCTCGCCAGCGGCCGCCTCCCAAGCGTGGGAGGCGCGGAGGCGGCGGCAGAGGTATGGGAAGGGGCGGGAGAGGTAGCCGGCATGGTGGGGAAGACGACGACGATGATGATGATGAGGGATCGGATGGTGGCGGTGGCGGTGCGGAGCGGTTTGAGGATGATAATTGGGCTTCGGTTGTTGATGGCGGCGCGGATGAGAGGCTTTTGGGGATGAACGAGAAGGTTGTTGCCAAGAAGAAAGAGAAGAAAGCTGGGTACTTCAGTGATGAGAGTGATGAAGATGATGATTGA 834 0.5983 MAPKRDTHSDSDEDDIFYYRFCSSSSASTQPQAQPQAQAQAHTNNITGSAGGSSSSSSSLAPSKSTIYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVTRDDARRAADQMHGKILNGRTLSASIAVDNGRAPEFIRKRVYKDTGRCFECGQSGHLSYDCPRNRLGPRQRPPPKRGRRGGGGRGMGRGGRGSRHGGEDDDDDDDEGSDGGGGGAERFEDDNWASVVDGGADERLLGMNEKVVAKKKEKKAGYFSDESDEDDD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00011 277 SUPERFAMILY Retrovirus zinc finger-like domains 143 178 IPR036875 GO:0003676|GO:0008270
Stsc30272g00011 277 MobiDBLite consensus disorder prediction 27 62 - -
Stsc30272g00011 277 Gene3D - 28 235 IPR012677 -
Stsc30272g00011 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Stsc30272g00011 277 SMART rrm1_1 66 139 IPR000504 GO:0003723
Stsc30272g00011 277 SMART rrm2_1 66 139 IPR003954 GO:0003676
Stsc30272g00011 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Stsc30272g00011 277 Gene3D - 143 185 - -
Stsc30272g00011 277 ProSiteProfiles Zinc finger CCHC-type profile. 161 177 IPR001878 GO:0003676|GO:0008270
Stsc30272g00011 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 276 IPR044598 GO:0000398|GO:0005689
Stsc30272g00011 277 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 149 - -
Stsc30272g00011 277 Pfam Zinc knuckle 161 176 IPR001878 GO:0003676|GO:0008270
Stsc30272g00011 277 SUPERFAMILY RNA-binding domain, RBD 35 148 IPR035979 GO:0003676
Stsc30272g00011 277 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Stsc30272g00011 277 MobiDBLite consensus disorder prediction 173 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00011 Stsc-Chr30272 65854 66687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30272g00011 64 128 Eukaryotic Initiation Factors Gene Family AT3G11400 40.000 8.88e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00011 K13154 - gmx:100814914 302.753