Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00008 ATGGCTGAAGAAGGTGAAGCTGAAGTTAAAGTGAATCCTCCTCAACAGAGGGTAGTGATGATTCAGGATGCATCAAGAGAGGTTAATTTAGAAGCAATTATGATGGCCACCAAAAAATTCTCTCTTAAATCTGGAGATCACCTCACAATTGTTCCAATCCTTGATTGGTTCAGTAGCCCTATGGGTTACATGATGAGAGTTGACTCCAGTTACTTTATTTCAACGAACAAGAAAGTGATTGAGGAACATAGTAAGAGATGGCTAGATCTTCGTAACAACCCTGATTTCTTTGCTCTCTTCAAAAAGAATGAGATAGCATTCAAAGTAGAAGTGCTTGCTGGGCCTGCCACAGACATTGCTTATAATGCTGTTAGAGAGTTTCAGGCAACACGTTTGGTACTTGACAAACGGATGCACAAAGAGATAAGGCACAACCTTGACAAGTTCTCTTGCCGTCTATATAAGATAAAAGGTAACAATTCTATTGAAAGGTTGAAGCCTACAAAATTAACAGAAAATAATAACAGCACCAAATCACATGGCAAAAGGAATGAAAATGCAACAAATACAGAAATTATTCAAGGAAGTGCAGATGAACCATCTTCACTAGCGTTTAGGTCGTCCACATCATTATCAAGTGACATAACATCCTCTTCAAATTCTTACTGGAGCACCAGTGAAGCCTCAACAACATCAACTGTTGCCGGTTCGCGACAACAAATCGACAATGTTGAAGAGCAACAAGTAGAATTCAAAAACCCTGTTTGCAGCAAGTGCAAGAACAAAAGACCGAGAATGGGAACGAAGATAGAGTTGAATTTATCAGAGATATCCAAAGTGACAGGGGGATTCTCTCAGAAGAATTTCATGTCGGAAGGAGGATTCGGCGCAGTGTACAAAGGACAATTGAGTAATGGAATGATGGTGGCTGTGAAGCAGCACAAGAATGCAAGCTTCCAAGGAGAGAAGGAGTTCAAGTCAGAGGTTAGTGTTCTGAGAGAAGCAAGACATGAGAATGTTCTCATGTTGCTGGGTTCATGCTCTGAGGGACACAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTTGATCAACATCTCTCTCAACACTCTCGATCACCTCTTAGTTGGGAACATAGAATTAAAGTGGCAATTGGAGCTGCAAGGGGGTTATTGTATCTACACTCCAAAAACATTATTCACAGAGATTTGAGACCAAACAATATTCTTGTAACACATGATTATCTTCCTCTGGTGGGTGATTTCGGGTTAGCAAGAACTCAAAATCAAGACTCAATACACTCAACAGAAGTGGTTGGAACATTGGGATATTTGGCACCAGAATATGCTGAATGTGGCAAAGTCTCAACCAAAACAGATGTGTACTCTTTTGGTGTTGTTCTTTTAGAGCTAATAACTGGAATGAGAACCAATGACAAAAGACTTGGAGGCAGAAGCCTTGTTGGCTGGGCAAGGCCACTATTAAGAGAGAGGAATTATCCAGATTTAATTGATGAAAGGGTTAAAGAAGACCATGATATTCATCAACTATTTTGGATGGTTCGTTTAGCTGAGAAGTGTTTAAGCAGAGACCCTCATAAAAGACTCACTATGGCTGCGGTGGTTAATGTTTTGAATGGCATAGTAGAAGGAAGTACATGCATCAAAATAAAGGAACACATGTATTCCCCAGCAAGATCAGACTCATTCTACAGTGAATCTGATTCTGATAATGATCATGAAGATGAACTGCATAGCTATGAATCTGAAAGTGAGTTACCAAATCATCAAGATACACAAGAATCCACAGCAAGTGATAGTAATCATAATACCAAAAATCAAATGATGCAACTAATTGTAAGACAACCCCCTTCACCTCCAATATGCACCTAA 1899 0.396 MAEEGEAEVKVNPPQQRVVMIQDASREVNLEAIMMATKKFSLKSGDHLTIVPILDWFSSPMGYMMRVDSSYFISTNKKVIEEHSKRWLDLRNNPDFFALFKKNEIAFKVEVLAGPATDIAYNAVREFQATRLVLDKRMHKEIRHNLDKFSCRLYKIKGNNSIERLKPTKLTENNNSTKSHGKRNENATNTEIIQGSADEPSSLAFRSSTSLSSDITSSSNSYWSTSEASTTSTVAGSRQQIDNVEEQQVEFKNPVCSKCKNKRPRMGTKIELNLSEISKVTGGFSQKNFMSEGGFGAVYKGQLSNGMMVAVKQHKNASFQGEKEFKSEVSVLREARHENVLMLLGSCSEGHNRLLVYEYVCNGSLDQHLSQHSRSPLSWEHRIKVAIGAARGLLYLHSKNIIHRDLRPNNILVTHDYLPLVGDFGLARTQNQDSIHSTEVVGTLGYLAPEYAECGKVSTKTDVYSFGVVLLELITGMRTNDKRLGGRSLVGWARPLLRERNYPDLIDERVKEDHDIHQLFWMVRLAEKCLSRDPHKRLTMAAVVNVLNGIVEGSTCIKIKEHMYSPARSDSFYSESDSDNDHEDELHSYESESELPNHQDTQESTASDSNHNTKNQMMQLIVRQPPSPPICT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00008 632 Gene3D Phosphorylase Kinase; domain 1 242 359 - -
Stsc30272g00008 632 SUPERFAMILY Protein kinase-like (PK-like) 274 555 IPR011009 -
Stsc30272g00008 632 Pfam Protein tyrosine and serine/threonine kinase 288 546 IPR001245 GO:0004672|GO:0006468
Stsc30272g00008 632 Gene3D Transferase(Phosphotransferase) domain 1 360 566 - -
Stsc30272g00008 632 MobiDBLite consensus disorder prediction 212 239 - -
Stsc30272g00008 632 MobiDBLite consensus disorder prediction 569 632 - -
Stsc30272g00008 632 SMART tyrkin_6 284 547 IPR020635 GO:0004713|GO:0006468
Stsc30272g00008 632 ProSitePatterns Tyrosine protein kinases specific active-site signature. 401 413 IPR008266 GO:0004672|GO:0006468
Stsc30272g00008 632 MobiDBLite consensus disorder prediction 574 597 - -
Stsc30272g00008 632 CDD STKc_IRAK 290 550 - -
Stsc30272g00008 632 MobiDBLite consensus disorder prediction 598 622 - -
Stsc30272g00008 632 ProSiteProfiles Protein kinase domain profile. 284 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30272g00008 632 PANTHER OS01G0750732 PROTEIN 170 580 - -
Stsc30272g00008 632 MobiDBLite consensus disorder prediction 165 188 - -
Stsc30272g00008 632 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 360 562 - -
Stsc30272g00008 632 FunFam Proline-rich receptor-like protein kinase PERK8 246 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00008 Stsc-Chr30272 52879 57689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30272g00008 272 554 Trihelix Transcription Factor Family AT5G38560 45.763 5.45e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc30272g00008 PK_Tyr_Ser-Thr 4.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00008 - - gmx:100794450 688.723