Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00007 ATGCCATTGCAGCAAGAACCATCAACAAGTCAGATGCTTTTATTGATCACCTTGTCTCGGTGCTTCAGTCAAAACACAAATCTCGGGAGAGAACTTACTACTCTTGAAATCAGGGATGCTCTTATCCCATACCTTGAATCTCTTCTCGAAGAGCATGGAGATATGCTAGTTGATGTAGTCGAAAACTATCCAAACCCCCCAGTTAAGGGAAAACCAGCTGTGCAGATTCCTCCTCCTACTCCAATAATAGACTCTAAGAAGCTTAGACCTGTGTCTCGAGTGACTGAGATAGACGCCACTGCTGGCAATCTTCGCCCTCATATTGTCTATCTCATGGAGTTCGGTATGAGTATTGAGCAAATCAACGGTATTATACGGAGATTCCCATCCTTTGCCTACTACAGCTTGGAGGGTAAAATTAAGCCTGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAGGACATCCCCACCATCCTCACTAAAAGGCCTCAATTATGTGGAATTAGCCTGTCCGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTAGGTGTCGATAAGAAACAATGGGCAAAGGTGATATACCGCTTCCCAGCCCTTCTAACTTACAGTAGGGACAAGGTGGAGGAGACCATAGATTTTCTCCGAGAATTGGGCCTCTCAGAAGATAACGTAGGTAAGATTTTAACTCGCTGCCCCAATATTGTAAGTTATAGTGTAGAGGACAACCTACGACCCACAGCTAACTACTTTCGTTCTTTGGGAGTGGATGTTGGTGTTCTTCTGTTCCGCTGTCCACAGAATTTCGGTCTTAGCATTGAGGCCAATCTGAAGCCAGTAACAGAGTTTTTCTTAGAAAAGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATTCGGTGCTCTGTATACCTTTAGCTTGTCAGACAATTTGATTCCAAAATGGGATTTCTTTGTGACCATGGGTTACCCAAATTCCGAGCTTGTTAAATTCCCTCAGTTTTTCGGATACAGTTTAGAAGAAAGAATTAAACCAAGATATGCGCGGATGAAAAGATCCGGGGTGAGGTTATTGCTTAACCAGGTTCTGTCACTGTCTAGCCGGAACTTTGAAGAGGCCTTAGAAAAGAAACTGAAAAAGAATTCGAGTTGA 1167 0.4293 MPLQQEPSTSQMLLLITLSRCFSQNTNLGRELTTLEIRDALIPYLESLLEEHGDMLVDVVENYPNPPVKGKPAVQIPPPTPIIDSKKLRPVSRVTEIDATAGNLRPHIVYLMEFGMSIEQINGIIRRFPSFAYYSLEGKIKPVVEFFLELGVPKEDIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWAKVIYRFPALLTYSRDKVEETIDFLRELGLSEDNVGKILTRCPNIVSYSVEDNLRPTANYFRSLGVDVGVLLFRCPQNFGLSIEANLKPVTEFFLEKGYTLEEIGTMISRFGALYTFSLSDNLIPKWDFFVTMGYPNSELVKFPQFFGYSLEERIKPRYARMKRSGVRLLLNQVLSLSSRNFEEALEKKLKKNSS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00007 388 Gene3D Transcription termination factor 3, mitochondrial 164 385 IPR038538 -
Stsc30272g00007 388 FunFam Transcription termination factor MTERF5 chloroplastic 165 385 - -
Stsc30272g00007 388 Pfam mTERF 278 376 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 Pfam mTERF 103 290 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 PANTHER CGI-12 PROTEIN-RELATED 110 379 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 330 361 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 194 224 IPR003690 GO:0003690|GO:0006355
Stsc30272g00007 388 SMART mt_12 298 329 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00007 Stsc-Chr30272 44080 46852 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc30272g00007 mTERF 2.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00007 K15031 - gmx:100781900 611.683