Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00006 ATGAAAACTTTCTCCTCACTTCATCCACATCACCATTTCCCTCTCACTAATAAATCTTACACTTCCATCCCCTCAAGAATTTACATCAGGACTCAACTCTCCTTTCCTGCAAAGTTCTTCTTGTGCCAGGCAAAATCTGGCACAAATGGGTCATTAAACGTGCGAGCTATGCCTCCCACTCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGGTGCTGTTTTTGAAAAAAGAAGGCTTGAGCAATGCCATTGCAGCAAGAACCATCAACAAGTCAGATGCTTTTATTGATCACCTTGTCTCGGTGCTTCAGTCAAAACACAAATCTCGGTACCTCGTAGGGAGAGAACTTACTACTCTTGAAATCAGGGATGCTCTTATCCCATACCTTGAATCTCTTCTCGAAGAGCATGGAGATATGCTAGTTGATGTAGTCGAAAACTATCCAAACCCCCCAGTTAAGGGAAAACCAGCTGTGCAGATTCCTCCTCCTACTCCAATAATAGACTCTAAGAAGCTTAGACCTGTGTCTCGAGTGACTGAGATAGACGCCACTGCTGGCAATCTTCGCCCTCATATTGTCTATCTCATGGAGTTCGGTATGAGTATTGAGCAAATCAACGGTATTATACGGAGATTCCCATCCTTTGCCTACTACAGCTTGGAGGGTAAAATTAAGCCTGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAGGACATCCCCACCATCCTCACTAAAAGGCCTCAATTATGTGGAATTAGCCTGTCCGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTAGGTGTCGATAAGAAACAATGGGCAAAGGTGATATACCGCTTCCCAGCCCTTCTAACTTACAGTAGGGACAAGGTGGAGGAGACCATAGATTTTCTCCGAGAATTGGGCCTCTCAGAAGATAACGTAGGTAAGATTTTAACTCGCTGCCCCAATATTGTAAGTTATAGTGTAGAGGACAACCTACGACCCACAGCTAACTACTTTCGTTCTTTGGGAGTGGATGTTGGTGTTCTTCTGTTCCGCTGTCCACAGAATTTCGGTCTTAGCATTGAGGCCAATCTGAAGCCAGTAACAGAGTTTTTCTTAGAAAAGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATTCGGTGCTCTGTATACCTTTAGCTTGTCAGACAATTTGATTCCAAAATGGGATTTCTTTGTGACCATGGGTTACCCAAATTCCGAGCTTGTTAAATTCCCTCAGTTTTTCGGATACAGTTTAGAAGAAAGAATTAAACCAAGATATGCGCGGATGAAAAGATCCGGGGTGAGGTTATTGCTTAACCAGGTTCTGTCACTGTCTAGCCGGAACTTTGAAGAGGCCTTAGAAAAGAAACTGAAAAAGAATTCGAGTTGA 1428 0.4314 MKTFSSLHPHHHFPLTNKSYTSIPSRIYIRTQLSFPAKFFLCQAKSGTNGSLNVRAMPPTLLAAEKEEAKAVLVLFLKKEGLSNAIAARTINKSDAFIDHLVSVLQSKHKSRYLVGRELTTLEIRDALIPYLESLLEEHGDMLVDVVENYPNPPVKGKPAVQIPPPTPIIDSKKLRPVSRVTEIDATAGNLRPHIVYLMEFGMSIEQINGIIRRFPSFAYYSLEGKIKPVVEFFLELGVPKEDIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWAKVIYRFPALLTYSRDKVEETIDFLRELGLSEDNVGKILTRCPNIVSYSVEDNLRPTANYFRSLGVDVGVLLFRCPQNFGLSIEANLKPVTEFFLEKGYTLEEIGTMISRFGALYTFSLSDNLIPKWDFFVTMGYPNSELVKFPQFFGYSLEERIKPRYARMKRSGVRLLLNQVLSLSSRNFEEALEKKLKKNSS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00006 475 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 417 448 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 281 311 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 385 416 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 209 240 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 349 380 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 SMART mt_12 316 347 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 Gene3D Transcription termination factor 3, mitochondrial 251 472 IPR038538 -
Stsc30272g00006 475 Pfam mTERF 191 377 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 Pfam mTERF 365 463 IPR003690 GO:0003690|GO:0006355
Stsc30272g00006 475 FunFam Transcription termination factor MTERF5 chloroplastic 252 472 - -
Stsc30272g00006 475 PANTHER CGI-12 PROTEIN-RELATED 169 466 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00006 Stsc-Chr30272 44080 46852 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc30272g00006 mTERF 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00006 K15031 - gmx:100781900 734.947