Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00005 ATGGCTGGAGGTGTTATTCAGCAGTTATTGAGGAGGAAACTCCAATCTTATTCTCCTAATGCTTCATCTATGTCTTCCATTCTCACAAAGAAAGATTGGGCTGGTTCCACTGGCAGCAGCTCGTTAAGAGCACTTGCATTAATTGGGGCTAGTGTCACTGGGTTTTTGGGTTTTGCGACAACAGCATCAGCTGATGAAGCCGAGCATGGCCTCGCATGCCCAAACTATCCATGGCCTCACCAGGGCATCCTCAGTTCATATGATCATGCTTCTATTCGTCGTGGTCATCAAGTCTATACACAAGTCTGTGCATCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGCGTTGCTTATACAGAAGAAGAAGTAAAAGCTATGGCAGCTGAGATTGAAGTGGTTGATGGCCNNNNNNNNNNCGAGGGCGAGATGTTCACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAACGAAGCAGCAGCTAGGTTTGCTAATGGAGGTGCCTATCCTCCAGATCTAAGTCTTATCACCAAAGCTCGTCACAATGGCCAGAATTATGTGTTTGCCCTTCTAACTGGTTATCGTGATCCCCCTGCTGGTGTTTCGATTAGAGAGGGTTTGCACTATAATCCTTATTTCCCTGGTGGAGCCATTGCCATGCCTAAAATGCTTAATGATGGCGCTGTTGAATATGAAGATGGAACTCCCGCCACCGAATCTCAGATGGGAAAAGATATTGTGTCTTTCTTATCTTGGGCTGCTGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTCAAATGGATCTTTGTTCTAACATTGGCATTGCTTCAAGCTGGATACTATCGCCGTCTTAGGTGGTCTGTTCTAAAGTCTCGGAAGGTGGTTCTTGATGTTGTCAATTAG 927 0.452 MAGGVIQQLLRRKLQSYSPNASSMSSILTKKDWAGSTGSSSLRALALIGASVTGFLGFATTASADEAEHGLACPNYPWPHQGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGXXXXEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDIVSFLSWAAEPEMEERKLMGFKWIFVLTLALLQAGYYRRLRWSVLKSRKVVLDVVN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00005 308 FunFam Cytochrome c1, heme protein 67 263 - -
Stsc30272g00005 308 Pfam Cytochrome C1 family 78 295 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 224 243 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 263 278 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 142 162 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 175 199 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 213 224 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 PRINTS Cytochrome C1 signature 244 263 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 Gene3D - 264 307 - -
Stsc30272g00005 308 PANTHER CYTOCHROME C1 35 306 IPR002326 GO:0009055|GO:0020037
Stsc30272g00005 308 FunFam Cytochrome c1, heme protein, mitochondrial 264 308 - -
Stsc30272g00005 308 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 263 307 IPR021157 -
Stsc30272g00005 308 SUPERFAMILY Cytochrome c 71 262 IPR036909 GO:0009055|GO:0020037
Stsc30272g00005 308 Gene3D - 67 263 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00005 Stsc-Chr30272 38848 42687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30272g00005 1 308 Chloroplast and Mitochondria Gene Families AT3G27240 83.442 9.25e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00005 K00413 - gmx:100803087 553.903