Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30272g00002 ATGAGCAGCTTCTTCACAAGAACAATAACAGCACAAACATCACCATCACCAAACTACGTTGGAGATGACTGCAAAAACTCAACACAACAATCTCTAACAAGTGGATACAAAACAAACCTCAACAGTGTCCTTTCATGGCTATCCTCTGATGCTGCCACAAGCAAGGGCTACAACCACACCGCCGTCGGAACCGCCACAAAAGATGCCGTCTATGGCCTCTATGACTGCAGAGGTGACGTGACGGGCACCTTCTGTCAGTTTTGCGTCTCCACTGCAGCTGCGGACATTCTTCAGCACTGTCCAAACAGGTCATCAGCAGTGATATGGTATAACTACTGCATACTCAGATACTCCAACCATGACTTCATCGGAAACCTTACAACAACCCCATCATGGCAAATTCCTCAGACCAAGAACACCACCAACAGCACTCTAGAGCTCCAAAATGCAGAGACTAACATGCAGAGTTTGATAAAGAATGCTACTGTGGAGACCAAGCTGTTGTATGCAATGGGTGAGTTCAACTCTGGTGGGTCATTAGGGGAAAGGTATGGGCTGGTGCAGTGTAGTAGGGACCTTACTAGTGAGCAGTGTAGAGAGTGCTTGAATGATATGTTGGATCAAGTTCCTAAATGTTGTGCTACAAAAGTTGGATGGCAAGTTTTGGCTCCAAGTTGTTTGATCAAGTATGATGATTTTATGTTCTACAAGTTGGTTACTACTAGTCAAGCACCTTCTCCAGCCAACAAGAACGGTACAAGTAAGACAAAAACTATAGTCATCATAGTGAGTGTGTTGGTGGCAGTAATTCTACTAAGCTGTGGCATTTACTTTTTATGGCGGAGGAATCAATCAAACGATGAGGCATTATTGTCAGAGAGCGCCCCTATATCAACACATTATAACCCTCAAGGTCAAGGAGATGATTCATTGAATGCCGATCTTCCTACAATTCCTCTAATTTGGATTAGAAGGAGCACTAATAACTTTTCAGATTCTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTATAAGGGAAGTTTACAAGATGGGACAGAAGTTGCCATCAAAAGACTCTCAAAAACATCTGGTCAAGGTTTAGACGAGTTCAAGAATGAAGTAATCTTCATAGCCAAATTACAACATAGGAACCTTGTGAGATTGCTGGGTTGTTGTGTTGAGGAAAATGAAAAGCTGCTTGTGTACGAGTATATGTCCAATTCCAGTCTTGCCCTTCATCTATTCGACGTGGAAAAACGAAAGCAACTAAGTTGGAAGGTTCGAATGAATATTATTAATGGAATTGCCAGAGGACTTCTATATCTTCACGAAGATTCTAGACTTAAAGTAATACATAGGGATTTGAAGGCCAGTAATGTTCTGCTTGATCAACATATGAATCCAAAAATATCAGATTTTGGATTAGCGAGAGCATTCGAAAAGGACCAAAATGAAGAAAATACTAGAAGAATTATGGGTACCTACGGATATATGGCTCCCGAATATGCAATGGAAGGGTTATACTCAGTAAAATCTGACGTTTTCAGTTTTGGAGTTCTTCTACTAGAAATCATTTGTGGCAAAAAGAACAGTGGATTCTATCTTTCAGAACATGGACAAAGTCTTCTTGTATATAGTTGGAGACTCTGGTGTGAAGGAGAATGTCTAAAGCTGGTAGATCCTATACTAGAAAATACATACACAAGAAATGAAGTTACAAGGTGTATTCATATTGGTTTGTTGTGTGTACAAGAAGATGCAGTAGATCGACCAACAATGTCTACAGTTATTGTTATGCTAGCAAGTGAGACAATGGCACTTCCTAAACCTAACCATCCTGCATTTTCAGTTGGAAGAAAGATCAATAAAGAAGAAGAGTCAACGTCAAAGGCATCTAATAAGGATTATCCTTCTGTCAATGAAGTATCAGTTTCTAATATTTTACCTAGATAA 1956 0.4029 MSSFFTRTITAQTSPSPNYVGDDCKNSTQQSLTSGYKTNLNSVLSWLSSDAATSKGYNHTAVGTATKDAVYGLYDCRGDVTGTFCQFCVSTAAADILQHCPNRSSAVIWYNYCILRYSNHDFIGNLTTTPSWQIPQTKNTTNSTLELQNAETNMQSLIKNATVETKLLYAMGEFNSGGSLGERYGLVQCSRDLTSEQCRECLNDMLDQVPKCCATKVGWQVLAPSCLIKYDDFMFYKLVTTSQAPSPANKNGTSKTKTIVIIVSVLVAVILLSCGIYFLWRRNQSNDEALLSESAPISTHYNPQGQGDDSLNADLPTIPLIWIRRSTNNFSDSCKLGEGGFGPVYKGSLQDGTEVAIKRLSKTSGQGLDEFKNEVIFIAKLQHRNLVRLLGCCVEENEKLLVYEYMSNSSLALHLFDVEKRKQLSWKVRMNIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDQHMNPKISDFGLARAFEKDQNEENTRRIMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKKNSGFYLSEHGQSLLVYSWRLWCEGECLKLVDPILENTYTRNEVTRCIHIGLLCVQEDAVDRPTMSTVIVMLASETMALPKPNHPAFSVGRKINKEEESTSKASNKDYPSVNEVSVSNILPR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30272g00002 651 Pfam Protein tyrosine and serine/threonine kinase 334 598 IPR001245 GO:0004672|GO:0006468
Stsc30272g00002 651 CDD STKc_IRAK 336 601 - -
Stsc30272g00002 651 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 297 405 - -
Stsc30272g00002 651 SUPERFAMILY Protein kinase-like (PK-like) 315 616 IPR011009 -
Stsc30272g00002 651 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 647 - -
Stsc30272g00002 651 ProSiteProfiles Gnk2-homologous domain profile. 128 235 IPR002902 -
Stsc30272g00002 651 MobiDBLite consensus disorder prediction 633 651 - -
Stsc30272g00002 651 Gene3D Transferase(Phosphotransferase) domain 1 406 611 - -
Stsc30272g00002 651 SMART serkin_6 330 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30272g00002 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Stsc30272g00002 651 Pfam Domain of unknown function (DUF3403) 603 651 IPR021820 GO:0004674
Stsc30272g00002 651 Gene3D Phosphorylase Kinase; domain 1 298 405 - -
Stsc30272g00002 651 FunFam Cysteine-rich receptor-like protein kinase 28 20 121 - -
Stsc30272g00002 651 Pfam Salt stress response/antifungal 148 231 IPR002902 -
Stsc30272g00002 651 Pfam Salt stress response/antifungal 24 119 IPR002902 -
Stsc30272g00002 651 MobiDBLite consensus disorder prediction 612 651 - -
Stsc30272g00002 651 Gene3D - 129 235 IPR038408 -
Stsc30272g00002 651 Gene3D - 18 122 IPR038408 -
Stsc30272g00002 651 ProSiteProfiles Protein kinase domain profile. 330 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30272g00002 651 FunFam Liguleless narrow1 406 609 - -
Stsc30272g00002 651 ProSiteProfiles Gnk2-homologous domain profile. 18 122 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30272g00002 Stsc-Chr30272 8100 13858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30272g00002 3 651 Receptor kinase-like Gene Family AT4G05200 43.004 3.61e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30272g00002 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30272g00002 - - ahf:112718031 1075.46