Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00021 ATGGCAGCATCATTGCTCCTGCTTCTGCTTTTCAATTTGAATCACATCAACATTGGAATTTGCCAAGATGATCCTGTTCATTGTCCAGCCCGTCTGTACTGTACAAAAAACGAAACCAATATTCTTGAGCTCCCCGGAGTTTCATCCTCAGTAAAACTCCCCGTCAGTCACATTAATTTCAAATCAAACGCCTTAGAAGTGTATGAAGACGGAATCTGTTTGTCAGAACTCTTTCTCAGACTCAATTATTCATCATTCTTTCCGTTCAAGTTCATTAGAAGAGATTTATTTGTCTTTGATGAAATCTACCCACTTAAACCCACCAACATCACTTTCTTCCGTTGTCCTTCAAAGTACAAGACGTCATCTTGCCGGATTCAAGCAGCTGACGATCACGACGGTCTCGTCAGCTCGAATCTCCTACGCTGCACAAAACTATCTCAACAGGTTTTGCCAATACCGGCCGAATTTATAAGAAACAAAGGAGAAGATCAACGAAGAGTTGAAACTTTTTTGAAGGACTATGAGGCATTGAACCCAACAAGATTCTCTTATGCTGATATCAAGAGAATCACACAGCAATTCAAGGACAAGTTAGGCGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAACTGTCCAATCAAATTATTGTTGCTGTCAAGATTCTCAATACTACTGAAGGAGATGGCAAAGAGTTCATAAATGAAGTTGGAACTATGGCTAAAATCCACCATGTCAATGTGGTTCGCTTGCTTGGCTATTGTGCTGACGGATCTCACCGTGCTTTAGTTTACCACTTCTTTCCCAAAGGTAGTCTGCAGAGCTTCATTGCTCCAACCGAGAATGAAACCTTTCTCGGATGGAACAAGTTGCATCAGATTGCTCTGGGCATAGCGAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTCTCACTCCAAAAATATCAGACTTTGGTTTGGCTAAGTTATGCTCCAAGAATCGAAGTACGGTGTCCATGACTGCAGCCAGAGAAACTTTAGGGTACATGGCACCAGAAGTTTTCTCAAGAAACTTTGGCAATGTATCTTACAAATCTGATATCTACAGCTATGGTATGTTATTGCTTGAAATTGTTGGAGGAAGAAAAAACACAAATGCAAGTGAAGAAGCTTTTCAAGTTCTATATCCAAATTGGATACACAATTTGCTTGAAGGAGATGATACATATATTCCAATTGATGATGATGGAGATTTTAGAATTGTAAAGAAACTTGCAATAGTGGGACTGTGGTGCATTCAGTGGCACCCGGTGCACCGTCCCTCCATGAAAAGTGTAGTTCAGATGCTTGAAGGAGAGGAAGATAAGTTGAAAGTGCCACCGAATCCTTTTGAATCTGCAGCTGCCATAAGTTCAAGTGCAATTATTCCAGCAAGATTCTTGAATTTGGAATTGGAAGTAATTCCAGAAACAGAATAA 1512 0.4034 MAASLLLLLLFNLNHINIGICQDDPVHCPARLYCTKNETNILELPGVSSSVKLPVSHINFKSNALEVYEDGICLSELFLRLNYSSFFPFKFIRRDLFVFDEIYPLKPTNITFFRCPSKYKTSSCRIQAADDHDGLVSSNLLRCTKLSQQVLPIPAEFIRNKGEDQRRVETFLKDYEALNPTRFSYADIKRITQQFKDKLGEGAHGAVYKGKLSNQIIVAVKILNTTEGDGKEFINEVGTMAKIHHVNVVRLLGYCADGSHRALVYHFFPKGSLQSFIAPTENETFLGWNKLHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESLTPKISDFGLAKLCSKNRSTVSMTAARETLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEIVGGRKNTNASEEAFQVLYPNWIHNLLEGDDTYIPIDDDGDFRIVKKLAIVGLWCIQWHPVHRPSMKSVVQMLEGEEDKLKVPPNPFESAAAISSSAIIPARFLNLELEVIPETE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00021 503 Gene3D Phosphorylase Kinase; domain 1 168 267 - -
Stsc30270g00021 503 FunFam PR5-like receptor kinase 268 473 - -
Stsc30270g00021 503 Gene3D Transferase(Phosphotransferase) domain 1 268 473 - -
Stsc30270g00021 503 ProSiteProfiles Protein kinase domain profile. 193 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00021 503 SUPERFAMILY Protein kinase-like (PK-like) 172 462 IPR011009 -
Stsc30270g00021 503 ProSitePatterns Protein kinases ATP-binding region signature. 199 221 IPR017441 GO:0005524
Stsc30270g00021 503 FunFam serine/threonine-protein kinase PBS1-like 161 267 - -
Stsc30270g00021 503 Pfam Protein tyrosine and serine/threonine kinase 194 460 IPR001245 GO:0004672|GO:0006468
Stsc30270g00021 503 PANTHER RUST RESISTANCE KINASE LR10-RELATED 165 478 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00021 Stsc-Chr30270 146375 148142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00021 173 474 Receptor kinase-like Gene Family AT1G66910 47.742 8.08e-99 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30270g00021 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00021 - - ahf:112805998 759.985