Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00020 ATGAGCTCCTTCTCCCGCTTAAAGTTTCTGCTCCTAATTATCACGGTTGCCCTACCACAACTAACTTGTGCAGCACAGGATCATAACAGAACATGTAGCCCTTCCTCCTGCGGAAAAATCACAAACATAACACATCCTTTCCGGCAGAAGGGCGACCCTGCAAACTGCGGCCATCCGGGGTATGAGTTGACCTGTGAGAATAACATCACCCTCTTACAACTTTTCCACGGTAAAACCTACCGTGTTGAAGCAATAAACTACAACAACTTCACCATCCGCCTTGTGGATCCCGCCATCTCGGACAATGACTGTTCTACCCTTCCTCGCTATTCTTTATCCCGTTCCAATTTCAGTACCTTTGATGATGATCATTATTACGTCACGATGGCTGAAATCGGAACGGGAACGTATGAATATCTTCAGGAACGAGTTTTCTTAAATGGCTCCACACAGGATGAGAACTTAGCAAGAATGTTCGAGCACGTGGTGTTGTTGAAGTGCAGCAATCCAGTGAGGGACGATCCACGGTACGTGGACACTGCACCTTGCATTAGCAATGATAATGTTTATGCTGTTCTTGGAGACTTGGCGGTGGGTGAGTTAAGAGATGATTGCCGTGTGAAGATGATTGCACCCTCATCGCTTCTTGTTGTTCCACCTAGATTGTGGGATGATTCGGCATTCATCGAAGAGAGGTTGTCATACGTTGAAATCCACAGGAAAATCAGTTACGGATTTGATCTTTCGTGGATGCAGAGCTTTGGTTGTGAAGATAAATGCGGGATGCAGAATGATTGCTCATTCAATGAAATCACTCAAAACATCACCTGTGGGGATCCCTATTATCCCGTTTGTGACTACACTTCACTGTTCAACTACAAATGTGGACTTCGCAAATTGGTAAACAAGGATAGTGGTGAGAACTTCTCTGAAGGAGATGTAATACCGATTGTTAAGGTTGGAGTATTCACGGGATTGTTTTTGGTGCCATACATAATCCTCAAACACACATTAGGTGTCATGTTCTTCTTTGGATTGTTGATCTACACGTTTCGAAGAAGGCATTTATCAATCTATGAAAATATTGAGGATTTTCTGCAAGGTAACACTCTCATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACTAGAGGTTTTAAGGAAAAGCTTGGAGAAGGAGGATTTGGTGCAGTCTACAAAGGAAAACTACAGAGTGGACCTTTTGTGGCCATAAAAATGTTGGGTAAAGCTAAAGCTAATGGCCAAGAATTTATCAGTGAAGTTGCTACCATTGGTAGAATACGCCATGCCAATGTGGTAAGGCTGATTGGATTTTGTGTCGAGGGTTCAAAACGTGCTCTTATATATGAATTCATGCCGAATGGTTCTCTAGATAAGTATACATTTTCCAAAGAAAAAAGTGCATCTCTAACTTCCGAAAAGATGTTTGAGATATCTGTGGGAGTGGCACGCGGCATGGCTTATTTGCATGAAGGATGTGACATGCAGATTTTGCATTTTGACATCAAGCCTCACAACATCCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATTGTATCTTTGACTGCGGCAAGAGGAACCATTGGTTACATGGCTCCAGAACTGTTCTATCAGAATATTGGAGCAGTATCTTACAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCGAGTCAAAGAAGAAATATGAATCCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGCAAAGGAAAATGATGAGATAGAGATGGAAAGTTTTGATCATGAAGAAAGGAGTGAACTGGCAAAAAAGATGTTTATAACTGCACTATGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATATTAGAAGGAGATGTCACAAGCATTGAAATGCCTCCAAAGCCTTCATTTTATCCAAATGATGTGATTCAAAGAGATTCAGAGATTGACTCACAAGTAAATGATTCAAGTAATTCTGATGTCTCTTCAAGTTTTGAGGAAGAAAGTACAACCAACCCTTTGTTAAAGTTTTCTAGTTGA 2151 0.4086 MSSFSRLKFLLLIITVALPQLTCAAQDHNRTCSPSSCGKITNITHPFRQKGDPANCGHPGYELTCENNITLLQLFHGKTYRVEAINYNNFTIRLVDPAISDNDCSTLPRYSLSRSNFSTFDDDHYYVTMAEIGTGTYEYLQERVFLNGSTQDENLARMFEHVVLLKCSNPVRDDPRYVDTAPCISNDNVYAVLGDLAVGELRDDCRVKMIAPSSLLVVPPRLWDDSAFIEERLSYVEIHRKISYGFDLSWMQSFGCEDKCGMQNDCSFNEITQNITCGDPYYPVCDYTSLFNYKCGLRKLVNKDSGENFSEGDVIPIVKVGVFTGLFLVPYIILKHTLGVMFFFGLLIYTFRRRHLSIYENIEDFLQGNTLMPIRYSYKEIKKMTRGFKEKLGEGGFGAVYKGKLQSGPFVAIKMLGKAKANGQEFISEVATIGRIRHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYTFSKEKSASLTSEKMFEISVGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNMNPHAEHSSQLYFPFWIYDQLAAKENDEIEMESFDHEERSELAKKMFITALWCIQLKPSDRPSMNKVVEILEGDVTSIEMPPKPSFYPNDVIQRDSEIDSQVNDSSNSDVSSSFEEESTTNPLLKFSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00020 716 FunFam serine/threonine-protein kinase PBS1-like 358 460 - -
Stsc30270g00020 716 Gene3D Phosphorylase Kinase; domain 1 363 460 - -
Stsc30270g00020 716 CDD STKc_IRAK 392 661 - -
Stsc30270g00020 716 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Stsc30270g00020 716 SMART serkin_6 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00020 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Stsc30270g00020 716 MobiDBLite consensus disorder prediction 682 716 - -
Stsc30270g00020 716 Pfam Wall-associated receptor kinase galacturonan-binding 32 96 IPR025287 GO:0030247
Stsc30270g00020 716 MobiDBLite consensus disorder prediction 669 716 - -
Stsc30270g00020 716 Gene3D Transferase(Phosphotransferase) domain 1 461 673 - -
Stsc30270g00020 716 Pfam Protein kinase domain 389 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00020 716 FunFam PR5-like receptor kinase 461 671 - -
Stsc30270g00020 716 ProSiteProfiles Protein kinase domain profile. 386 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00020 716 SUPERFAMILY Protein kinase-like (PK-like) 371 659 IPR011009 -
Stsc30270g00020 716 PANTHER RUST RESISTANCE KINASE LR10-RELATED 359 683 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00020 Stsc-Chr30270 142414 145739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00020 7 675 Receptor kinase-like Gene Family AT5G38260 34.815 3.60e-110 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30270g00020 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00020 - - adu:110273082 903.664