Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00019 ATGGTGTCGCTGAAGCTTCAGAAGCGATTGGCGGCGAGCGTTCTAAAGTGTGGAAGAGGAAAAGTCTGGCTTGATCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAGAACATTCGGAAGTTGGTTAAAGATGGATTTATCATCAGGAAGCCAACCAAGATTCACTCACGCTCCCGGGCTCGCAGGATGAAGGAAGCCAAGAGGAAGGGACGCCACTCCGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGAATGCGTGTTCTCAGGCGATTGCTTCGTAAGTACAGGGAATCAAAGAAAATCGACAAGCACATGTACCATGATATGTACATGAAAGTGAAGGGTAATGTCTTCAAGAACAAGAGAGTTTTGATGGAAAGCATCCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACTTTGTCCGATCAATTCGAGGCCAAGCGTGCAAAGAACAAGGCTAGCCGGGAAAGGAAAATCGCTCGAAGGGAGGAACGCCTGGCCCAAGGTCCACGAGAGAAGGTCGCAGCAGCACCAACTAGTGCTCCACCTGCTACAACACCCCAGCCTGCCCAAGCACTAAAGAAATCCAAGAAGTAA 642 0.4938 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPREKVAAAPTSAPPATTPQPAQALKKSKK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00019 213 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc30270g00019 213 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc30270g00019 213 MobiDBLite consensus disorder prediction 149 185 - -
Stsc30270g00019 213 MobiDBLite consensus disorder prediction 57 85 - -
Stsc30270g00019 213 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Stsc30270g00019 213 Gene3D - 57 192 - -
Stsc30270g00019 213 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Stsc30270g00019 213 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc30270g00019 213 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Stsc30270g00019 213 FunFam Ribosomal protein L19 1 56 - -
Stsc30270g00019 213 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Stsc30270g00019 213 MobiDBLite consensus disorder prediction 57 79 - -
Stsc30270g00019 213 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Stsc30270g00019 213 MobiDBLite consensus disorder prediction 149 213 - -
Stsc30270g00019 213 FunFam Ribosomal protein L19 57 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00019 Stsc-Chr30270 139336 142086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00019 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.568 4.60e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00019 K02885 - gmx:100527501 374.785