Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00014 ATGCCTCCAATAATTTCACGCAAACCATCATCACCACCACCATCACCATCTTCTTGTGTTGTGCATGATGATCATCATGATGAGAAAATCATGAAGAGATCAACAACATGTAACGGTAACAACAACAGTAATAGTAATAATAATGTTCTTGTTGATGTTAGGCATCTTACAAGACAGAGGAAGCTGATTAGGCACCTTAAGGACAAAGAAGTGTTTGGTTTGATTCATTTGCACTCCACGGTCAATTGTTCTTCTTCTTCGTCGGCAGAGTTGCCTTTGTCGTGGAAGTCTTGCTCGCGAGACATCGGTTTTAGCAGCGGCTGCGGACACTGCTCTATTTCTGCCGTGCCGCAGCCGTTGCCACTCCCTGAGTCATCGACACTTATGATGATGACTCAGAGAGCTGAGTCAACCGGCCTCGGAGCAGGAAATGTCCACCTACTAAGATCTACTTCCATTGATCATCCTAGTTTTGCTTTGACTTTGAGGAAAACAGTGAATCATGGTGCATTGACATGTACAAAACCTTCAAGCAATTTGGATAGACTCTCTATAGAGAAAGCAAAAAATAATCTGAGAGTGCACATTCCAGCTAAAAGTTTCTTGGAAGGAAATAGTTCATGCAAAATTCCCCAATCAGTGTGTCATTATGAAGAAAATGATGAAGATGATTGTGTGAGTATTTCTGGTTTGAGCATGCATGTTTCTGCCAAGAGTGCCCCATCAAGTGTCTTCTCTAGTCCAGTCACTAGTCCACATAATCATGGATCAAATAACAATAATCAGCTACAACATTTCCTTCAAGAACTCATCAATGACAATAGTTATTTGAATTTGGATCATCATCTTCATCAACTACAACAAGCTAGTAACAAAAATAATGTTCATCATAAAAGTAACCATGCTTATGCACATCCCTTGCCACTTCCTCCTAGAGTTTCATCATCAATGGTGCAGCAACAACCATCTTTGCAGCTGCATCATAATTCAAGTGCTATTATGCAACATGTCTCAGAGAATCAGCATCATCCACTACCTTCTTCAATGAAAGGACAATGGCAGAAATGGAAACTAATCGGTCGCGGCACCTTTGGAAGTGTTTATCATGCAACAAACCTAGAAACTGGAGCTTCTTGTGCAATGAAGGAGGTGGATATAATTCCTGATGATCCTACATCTGCTGAGTGCATAAAGCAACTAGAGCAGGAAATCAAGATCCTTCGTCAACTACACCACCCCAACATTGTGCAGTATTATGGAAGTGAAATAGTTGGTGATCATTTATACATATATATGGAGTATGTTCATCCAGGATCAGTTAACAAATTCATTAGGGATCATTATGGAGCTATGACAGAATCTGTTGTTAGAAATTTCACCAGACACATTCTCTCTGGATTGGCCTACTTACATAGCACCAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTAATGAATCTGGTATTGTCAAGCTTGCAGATTTCGGGATGGCGAAAATTCTTTCAGAGGATTCATATGAACTTTCTTTGAAGGGAAGTCCTTATTGGATGGCTCCTGAGGTGATGAAAGCTGCAATTAAGAATGAAAAAAATCCTGATGTTGCCATGGCCATTGATATATGGAGCTTAGGCTGCACCATCATTGAAATGATGACAGGAAAGCCACCATGGAGTGACTTTGAAGGGCCATCAGCAATGTTCAAGGTACTACACAACACACCACCAATACCTGAGAGTTTATCTTCAGTGGGAAAGGATTTTCTGCAGCAATGTTTCAGAAGAGACCCTGCTGATAGACCTTCTGCAACAATGCTTCTTAAGCATCCCTTTCTGCAAAATTTTCATGATCAAGATGCTTTAACTCATCCAAATTTCTGTCACAAAGGAGACCAAGGACAAGATGTAATGCCATCAACCACCATTAGCACAAAGATTTTAAACAAAACTCAAAAATTAATGGGGTAA 1974 0.4037 MPPIISRKPSSPPPSPSSCVVHDDHHDEKIMKRSTTCNGNNNSNSNNNVLVDVRHLTRQRKLIRHLKDKEVFGLIHLHSTVNCSSSSSAELPLSWKSCSRDIGFSSGCGHCSISAVPQPLPLPESSTLMMMTQRAESTGLGAGNVHLLRSTSIDHPSFALTLRKTVNHGALTCTKPSSNLDRLSIEKAKNNLRVHIPAKSFLEGNSSCKIPQSVCHYEENDEDDCVSISGLSMHVSAKSAPSSVFSSPVTSPHNHGSNNNNQLQHFLQELINDNSYLNLDHHLHQLQQASNKNNVHHKSNHAYAHPLPLPPRVSSSMVQQQPSLQLHHNSSAIMQHVSENQHHPLPSSMKGQWQKWKLIGRGTFGSVYHATNLETGASCAMKEVDIIPDDPTSAECIKQLEQEIKILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSVNKFIRDHYGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGMAKILSEDSYELSLKGSPYWMAPEVMKAAIKNEKNPDVAMAIDIWSLGCTIIEMMTGKPPWSDFEGPSAMFKVLHNTPPIPESLSSVGKDFLQQCFRRDPADRPSATMLLKHPFLQNFHDQDALTHPNFCHKGDQGQDVMPSTTISTKILNKTQKLMG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00014 657 SMART serkin_6 353 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00014 657 Gene3D Transferase(Phosphotransferase) domain 1 350 643 - -
Stsc30270g00014 657 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524
Stsc30270g00014 657 MobiDBLite consensus disorder prediction 1 23 - -
Stsc30270g00014 657 FunFam Mitogen-activated protein kinase kinase kinase 5 350 651 - -
Stsc30270g00014 657 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30270g00014 657 SUPERFAMILY Protein kinase-like (PK-like) 342 624 IPR011009 -
Stsc30270g00014 657 Pfam Protein kinase domain 354 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00014 657 ProSiteProfiles Protein kinase domain profile. 353 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30270g00014 657 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 57 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00014 Stsc-Chr30270 104533 109454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00014 349 616 MAP Kinase Kinase Kinase AT5G66850 73.134 1.58e-146 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc30270g00014 Pkinase 3.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00014 - - gmx:100819530 596.66