Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00012 ATGAAGCTTATGATGATGTTATCTTTCAAACTACTTTTGTTCTCATCACTATTTTTGTGTATGTTGATGAATTTGTCAATCAGCAAATGCAAGGCCCATAATAACCAACAAGGTGAATATCTCTCTAAGTTGATTCATTCAAAGAGATCTCATCATAATACTAAGAATCCATCACTACATAACAATGGAGAATTAGAAGAAGCTTTCACTACTTCTTATCTTCCACAACTATATGTTGATGATGATCATCAACAATCTAAAGAAGATGATAAAGTTGAAGGTTTGCCAGGACAACCTCAAGGAGTGGATTTTGATCAATATGCTGGCTATGTAACTGTGGATTCAAACAAAGGAAGAGCACTCTTCTACTACTTTGTTGAGTCACCTCAAAATTCTTCCACCAAACCTCTTGTTCTATGGCTAAATGGAGGGCCAGGGTGCTCTTCTCTGGGGTATGGAGCAATGGAAGAATTGGGACCTTTTAGAATCAAAAGTGATGGAAGAACACTTTACAGAAATCCCTATGCATGGAACAATGTTGCAAATGTGATTTTCCTAGAGTCACCAGCAGGTGTTGGATTTTCATATTCAAACACTACCTCGGACTATGCTAACACCGGTGACAACAGCACTGCCTTGGATTCTTACACATTCCTTGTGAAGTGGCTTGAGAGATTCCCACACTACAAAACTCATGACTTCTTCATAACTGGAGAAAGCTATGCCGGCCATTATGTCCCTCAACTTGCTCACACTATCCTCTCCTACAACAAGATCGCCGCGTCAAATCATCAAACAGTTATCAACCTCAAAGGAATCGCGGTTGGGAATGGATGGATAGATGATAGTTTGTGTACAAAGGGCATGTATGATTATTTCTGGTCACATGGTCTAAGCTCTGATGAATCCCATTCAGGAATTGAAAAAAATTGTGACTATGTTAGTGGTAATTTCTCTGATGAATGCGACAAATATATAAGCATGGCTAGTGATGAAGTTGGAGATATTAACATATACAACATATATGCTCATCCTTGTGATTCTTCTTCATCTGCTTCAAAATCTCAAGGAAGTGAGTTCGACCCTTGTTCTGATGCTTACACAGATTCCTACTTGAATCTCCCAGAAGTTCAAAAGGCCCTTCATGCTAAAGCCACAAATTGGTCTTCTTGCAGCTCGGTGGGATGGACGGATAGTCCATCAAGTATTCTACCAACTATGAATAGATTAATATCAAGTAACATAAGCATATGGATTTATAGTGGAGACACAGATGGTCGTGTTCCCATAACTTCATCAAGGTATTCAATAAATGCCCTCAAACTTCCATTACAGACACCTTGGCGTTCATGGTCTTGTGCCAATGAGGTTGGAGGATATGTTGTTGGGTATAAAGGGCTTACTCTCATAACTGTAAGAGGAGCAGGGCACACTGTTCCAAGCTACCAACCTCAGAGAGCACTAACCATGATCTCACATTTTCTCAATGGAGAACTTCCACCACAGAATTAA 1512 0.3962 MKLMMMLSFKLLLFSSLFLCMLMNLSISKCKAHNNQQGEYLSKLIHSKRSHHNTKNPSLHNNGELEEAFTTSYLPQLYVDDDHQQSKEDDKVEGLPGQPQGVDFDQYAGYVTVDSNKGRALFYYFVESPQNSSTKPLVLWLNGGPGCSSLGYGAMEELGPFRIKSDGRTLYRNPYAWNNVANVIFLESPAGVGFSYSNTTSDYANTGDNSTALDSYTFLVKWLERFPHYKTHDFFITGESYAGHYVPQLAHTILSYNKIAASNHQTVINLKGIAVGNGWIDDSLCTKGMYDYFWSHGLSSDESHSGIEKNCDYVSGNFSDECDKYISMASDEVGDINIYNIYAHPCDSSSSASKSQGSEFDPCSDAYTDSYLNLPEVQKALHAKATNWSSCSSVGWTDSPSSILPTMNRLISSNISIWIYSGDTDGRVPITSSRYSINALKLPLQTPWRSWSCANEVGGYVVGYKGLTLITVRGAGHTVPSYQPQRALTMISHFLNGELPPQN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00012 503 SUPERFAMILY alpha/beta-Hydrolases 92 498 IPR029058 -
Stsc30270g00012 503 Gene3D alpha/beta hydrolase 83 357 IPR029058 -
Stsc30270g00012 503 FunFam Carboxypeptidase 86 348 - -
Stsc30270g00012 503 Pfam Serine carboxypeptidase 96 497 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 ProSitePatterns Serine carboxypeptidases, histidine active site. 467 484 IPR033124 GO:0004185
Stsc30270g00012 503 ProSitePatterns Serine carboxypeptidases, serine active site. 236 243 IPR018202 GO:0004185
Stsc30270g00012 503 FunFam Carboxypeptidase 403 497 - -
Stsc30270g00012 503 Gene3D - 403 497 - -
Stsc30270g00012 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 222 247 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 185 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 467 480 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 196 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 91 484 IPR001563 GO:0004185|GO:0006508
Stsc30270g00012 503 Gene3D - 363 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00012 Stsc-Chr30270 71452 77885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00012 371 498 Calmodulin-binding Proteins AT2G22960 31.343 3.32e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00012 K16297 - gmx:100818983 681.404