Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30270g00011 ATGGAACAGCAACAACAACAATCCAACGGTTCTGATTCGCCGCAACAGAAACAACAGCAACCGTCGTCGGAGAGCCAGCAGCCGCAACAACAGCCGAAGCAGCAACAGCGGCAACCTCCGCCGGCGGTGGCCGTGGCGACGCAGCAGTGGATGCCTTATCCTGCGGCGGCGATGGTAATGCAGCATCACATGTTGCCGCCGCAGCACTACGCGCCGCCGCACTACGTTCCTTATCATCATCCCTACCACGCGCCGGCTCCACCTCCGCCGCCTCCTCACGTCGCTCACCACAACCACCACAACCACCAGCATGGATCCGGCGGCGGCGAGAACAAGACGGTTTGGGTTGGAGATTTGCATAACTGGATGGATGAGAGCTTTCTCCATCGATGCTTCGCTTCCACCGGCGAGATTTCGTCCATCAAGCTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTTCATTCACATGCTACAGCTGAGAAGGTTTTACAGAGTTATGCTGGAATTTTGATGCCGAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGTACAGGAGAGAAGTCCTCAGNNNNNNNNNNTATTTTCGTAGGAGACTTAGCTGCAGATGTTACAGATAGCTTGTTGCATGAAACTTTTGCTAGCGTGTTCCCTTCTGTTAAAGCTGCTAAAGTTGTCTTTGATGCCAATACCGGCCGTTCGAAGGGCTATGGTTTCGTTAGGTTTGGAGACGATAACGAGAGGACAAAAGCTATGACTCAAATGAACGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGCGCTGCAACTCCGAGGAAATCATCTGGCCATCAACTAGGAGGCCAGACAAATGGCTCATACAGCCAATCTGAAGCGGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCCCAGTATGGTGAAATAGTATCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCGGAAGAGGCATTGCAGAAGCTAAATGGGACAGTGATTGGCAAGCAAACGGTTCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTTGGTGGCAACCACTGGAGCGGCACCTATTACGGAGCTCCTGTTTATGATGGTTATGGATATGCATTGCCTCCTCCTCATGATCCAAGCATATATGCCGCTGCATATGCTGCTTACCCTATCTATGGAGGCCACCAACAACAAGTAAACTGA 1317 0.4905 MEQQQQQSNGSDSPQQKQQQPSSESQQPQQQPKQQQRQPPPAVAVATQQWMPYPAAAMVMQHHMLPPQHYAPPHYVPYHHPYHAPAPPPPPPHVAHHNHHNHQHGSGGGENKTVWVGDLHNWMDESFLHRCFASTGEISSIKLIRNKQTGLSEGYGFVEFHSHATAEKVLQSYAGILMPNTEQPFRLNWATFSTGEKSSXXXXIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTKAMTQMNGVYCSSRPMRIGAATPRKSSGHQLGGQTNGSYSQSEADSTNTTIFVGGLDPNVTDEDLRQQFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30270g00011 438 Gene3D - 111 191 IPR012677 -
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 1 47 - -
Stsc30270g00011 438 CDD RRM2_SECp43_like 204 280 - -
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 80 112 - -
Stsc30270g00011 438 CDD RRM3_NGR1_NAM8_like 306 377 - -
Stsc30270g00011 438 Gene3D - 287 385 IPR012677 -
Stsc30270g00011 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 281 IPR000504 GO:0003723
Stsc30270g00011 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 192 IPR000504 GO:0003723
Stsc30270g00011 438 SMART rrm1_1 113 188 IPR000504 GO:0003723
Stsc30270g00011 438 SMART rrm1_1 203 277 IPR000504 GO:0003723
Stsc30270g00011 438 SMART rrm1_1 308 375 IPR000504 GO:0003723
Stsc30270g00011 438 CDD RRM1_SECp43_like 113 193 - -
Stsc30270g00011 438 FunFam Polyadenylate-binding protein RBP47B 193 292 - -
Stsc30270g00011 438 Gene3D - 203 277 IPR012677 -
Stsc30270g00011 438 SUPERFAMILY RNA-binding domain, RBD 297 408 IPR035979 GO:0003676
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 285 302 - -
Stsc30270g00011 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Stsc30270g00011 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 372 IPR000504 GO:0003723
Stsc30270g00011 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 1 43 - -
Stsc30270g00011 438 SUPERFAMILY RNA-binding domain, RBD 187 296 IPR035979 GO:0003676
Stsc30270g00011 438 SUPERFAMILY RNA-binding domain, RBD 83 192 IPR035979 GO:0003676
Stsc30270g00011 438 FunFam Polyadenylate-binding protein RBP47 293 410 - -
Stsc30270g00011 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 99 383 - -
Stsc30270g00011 438 FunFam Polyadenylate-binding protein RBP47B 111 191 - -
Stsc30270g00011 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 379 IPR000504 GO:0003723
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 277 302 - -
Stsc30270g00011 438 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30270g00011 Stsc-Chr30270 67134 71412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30270g00011 91 387 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 1.06e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30270g00011 - - adu:107495791 688.723