Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00025 ATGGCTGCAGCAGAGGCAGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCCGATGATCCCACCCTTCCTACGCCGTGGAAGGGGCTAATTGATGGAAGCACCGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCTTCGGGCCCTGCTCCGGCAGCTTCTACACCCAACATGGCGCCCATACCCGCGGCTCATTCGATGCCATCAGGTGGGATGGCAGGGCAGCATGGGCAGCAAGGGAGTCACCCTGCTCAGCAACATGGACAAATGATGCCACAACAGCAGAGTTCACATGTGGCATCTCAGCCGCAGCCATCTCCAGTTGCACAAGGTGTGCAACAGCAGAATTTGCAGTCGGTACAGTCCATGCCACAACCAGGGTTTAATCAGGCGGGACAGCATTCAGTGCCGCATCAGGGACAGCATCCAATGCAGCCTCAGGGTCAGTATCCAATGCAACCTCAAGGGCAACAAATTGTCCAGCCTAAAGGGCAGCAGATGACACAACAACAACATCAGATGCATTATCAGATGCAACCCCAACATTTTGGGCAAGGAGCATCTCAGGCTCACGGCTCACATGCTGTGCAACGACAAGCGCATCAGTTCCCACCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAATCTGTGCAGCAAAGTTCCCAGCATAACATGCATGGTCATCCATATGAAAACCAACAAGACTTTAAACCATCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGGTTGGAGTTTCGCCATCTAATTATCAACAAAGCAATCAGAACATACCTGCCGGAATCCGATCCGGGCCGTCCGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGTGTACCGGGAAGTGTACAACAGTCGCCCTCTGCAATGCCGTTACAGCAGGTTAGTTCTTATTCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGCCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAATTTCCATGGTAGACCTGGGAATGAATATTACTATAATACTGGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATTCCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGTGGCCCTTTTCAAAATGTGATGCCTAGTGGAAATGGAAGTGGTATGCCAGGTCATCCAATGCAGAACATGTTTCCACCAGTAGGCGGGCATCCACCTCTCCCAAGTAACTCCTTGAAAGGACCTCCTTATATTGGATCTTCAGATGCTACTGATATGACGCCTGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACATGGCCAGTCGCACTGCAAGGTAGGGACATAGTGGCAATTGCGAAAACAGGATCTGGCAAAACACTGGGCTACTTAATGCCTGCATTCATTCTTCTTAGGCAGAGACGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCACCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCTCCCAAAGCCCAACAGCTAAAAGAGTTAGATCGAGGTGCAGACATTGTTGTTGCCACACCTGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTAGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGTCTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCAAAGGTTATTATATTTTGTTCTACAAAGAGGTTATGTGATCAACTTGCCCGTAGTATCGGTCGCAATTATGGGGCTTCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGATATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCCACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCAGAGCAGGACTGGAAACATGCAGCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGTATGTGCCTCCAGAGCTAAGACAGATGACCATGCGTGGACCACCAAACTTTGGAAAAGATCGTGGTGGGATGAGTCGTTTTGACTCTGGTGGTGGTGGTGGGCGTTGGGATAATGGTGGCCGTGGTGGCATGAGGGATGGGGGCTTCAGTGGTCGGGGTGGCGTGAGAGATGGTAGCTTCAGTGGTCGGGGTGGCATGAGGGATGGTAGCTTTGGTGGCCGGGGTGGCATGAGGGAAAGTGGATTCAGCAATGACGGTGGCATGAGGGATGGTGGCTTTGGTGCTCATGGTGCAAGTGGTCAAGGTGGGAGAGGTGATATGTTTGGTGGTAGGGGCAATAGGGGCCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGTGAACGTGGTCCAAATGATCGATTCAGCATGGATGGAAGAGGAAGAGGTCGAGGACGTGGGCGATTTGACAACAGAAGAGATGTTGGTTACAGGAATAGAGGCAGAAGCCGTAGCCGTAGCCCAGATAGAGTGCGTACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGAAGTAGGAGCTGGAGCAGGAGCCGCAGCCGAAGCCGTAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCGTAGCCCTAGCCCTCGTCGGAGTAGCAGCCGCAGTTACAGCCGCAGCCGAAGTCCCCGTAGAAGTCCTAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTCTAGAGAACCAGAGGTTCGAGCTTCCAATCCGGGAATGTCTCCAAGCTCCCAAGGGAAACAGAATTCAATTTTGGTAACTGATCATGTGGATCAGCCGCCACCAGTTGCTGGCAGTGGTGACCCAGAAGATCCCAATGCTCCGGCATAG 3318 0.4988 MAAAEAAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPAAHSMPSGGMAGQHGQQGSHPAQQHGQMMPQQQSSHVASQPQPSPVAQGVQQQNLQSVQSMPQPGFNQAGQHSVPHQGQHPMQPQGQYPMQPQGQQIVQPKGQQMTQQQHQMHYQMQPQHFGQGASQAHGSHAVQRQAHQFPPQNMHYMPYQPNMPQSVQQSSQHNMHGHPYENQQDFKPSFPKIEEPEFKNENQVGVSPSNYQQSNQNIPAGIRSGPSGQVPDGGANAGHSKQFGGVPGSVQQSPSAMPLQQVSSYSVYQHGPSFQNQMGPGMMHGHPPNAHPGSQKMGHADNFHGRPGNEYYYNTGKEMPAMGPQQPNIAPIPISTKQQDMRMGSGPFQNVMPSGNGSGMPGHPMQNMFPPVGGHPPLPSNSLKGPPYIGSSDATDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGASAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAADLIKVLEGANQYVPPELRQMTMRGPPNFGKDRGGMSRFDSGGGGGRWDNGGRGGMRDGGFSGRGGVRDGSFSGRGGMRDGSFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRGDMFGGRGNRGRGFGGPRGGHAGWGRGERGPNDRFSMDGRGRGRGRGRFDNRRDVGYRNRGRSRSRSPDRVRTWDYSSRSRSRSRSRSRSWSRSRSRSRSWSRGRSRSRSYSRSPSPRRSSSRSYSRSRSPRRSPSYDRRDRTDQHHSDQKDSREPEVRASNPGMSPSSQGKQNSILVTDHVDQPPPVAGSGDPEDPNAPA 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00025 1105 SMART ultradead3 505 1078 IPR014001 -
Stsc30268g00025 1105 Gene3D - 638 812 IPR027417 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 1066 1084 - -
Stsc30268g00025 1105 ProSitePatterns WW/rsp5/WWP domain signature. 27 53 IPR001202 GO:0005515
Stsc30268g00025 1105 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Stsc30268g00025 1105 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 617 810 - -
Stsc30268g00025 1105 CDD WW 24 52 IPR001202 GO:0005515
Stsc30268g00025 1105 SMART ww_5 22 55 IPR001202 GO:0005515
Stsc30268g00025 1105 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Stsc30268g00025 1105 CDD SF2_C_DEAD 651 780 - -
Stsc30268g00025 1105 SMART helicmild6 687 771 IPR001650 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 83 181 - -
Stsc30268g00025 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 787 IPR027417 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 229 253 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 931 986 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 229 244 - -
Stsc30268g00025 1105 Pfam Helicase conserved C-terminal domain 663 771 IPR001650 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 808 1105 - -
Stsc30268g00025 1105 FunFam ATP-dependent RNA helicase RhlB 641 813 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 1011 1035 - -
Stsc30268g00025 1105 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 686 IPR014001 -
Stsc30268g00025 1105 Pfam WW domain 23 53 IPR001202 GO:0005515
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 53 67 - -
Stsc30268g00025 1105 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 810 IPR001650 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 267 319 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 1036 1062 - -
Stsc30268g00025 1105 Gene3D - 456 616 IPR027417 -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 987 1010 - -
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 267 288 - -
Stsc30268g00025 1105 ProSiteProfiles WW/rsp5/WWP domain profile. 21 55 IPR001202 GO:0005515
Stsc30268g00025 1105 MobiDBLite consensus disorder prediction 50 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00025 Stsc-Chr30268 134275 139625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00025 474 811 Eukaryotic Initiation Factors Gene Family AT3G19760 29.873 2.98e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00025 K12823 - gmx:100807830 1156.35