Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00021 ATGGTGCAATCAAGAAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAGATTCGCCACCCACTCTTGAAGAGGAGGGTTTGGTTAGGCACATTTGAGACCGCAGAAGAAGCTGCAAGAGCCTATGATCAAGCTGCCATTTTGATGAGTGGAAGAAATGCAAAGACCAATTTCCCCATCATGCATACACGGGACGGTGATCCAAAGGCTGTTACTTCCGCCGAGGACGCAGCGCCGCCGCCTTCTTCCACCGCCAATAAGGATCTAGAGGAGATTCTACACGCCAAGCTTCGAAAATGCGGCAAGGTTCCTTCCCCTTCCATGACATGCTTGAGGCTCGACACGGAGAATTCCCACATTGGTGTGTGGCAGAAGCGCGCTGGCCAGCGTTCTGATTCCAATTGGGTTATGAGGGTTCACCTCGGTGCTGCAAATAAGAACACTGCTATGAGTTCTTCTTCCATGGCCGCGGGTTCTTCTTCTTGTGATGTTCTTCCGTCTCCGTCGTCGTCGTCAACCGTATCGGGTGGTGGTGATAAGAGAGAGATGGATGAGGAAGAGAGAATAGCATTGCAGATGATTGAAGAGCTTCTCAACAGAAACTGTCCAAGTCCATCGCCATTCATCACAAACAACTTGGATCACCATGATCAAAGGGATGATGGTCACGGTGATGAAGATGATAATGCTACCTTCTTTCTTTGA 717 0.4979 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIMHTRDGDPKAVTSAEDAAPPPSSTANKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVHLGAANKNTAMSSSSMAAGSSSCDVLPSPSSSSTVSGGGDKREMDEEERIALQMIEELLNRNCPSPSPFITNNLDHHDQRDDGHGDEDDNATFFL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00021 238 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 MobiDBLite consensus disorder prediction 205 238 - -
Stsc30268g00021 238 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Stsc30268g00021 238 MobiDBLite consensus disorder prediction 155 187 - -
Stsc30268g00021 238 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Stsc30268g00021 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 169 - -
Stsc30268g00021 238 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 MobiDBLite consensus disorder prediction 69 89 - -
Stsc30268g00021 238 MobiDBLite consensus disorder prediction 217 232 - -
Stsc30268g00021 238 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Stsc30268g00021 238 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Stsc30268g00021 238 MobiDBLite consensus disorder prediction 155 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00021 Stsc-Chr30268 106922 107861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00021 1 205 AP2-EREBP Transcription Factor Family AT1G15360 61.650 4.04e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30268g00021 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00021 - - adu:107472039 344.739