Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00017 ATGAAATTATCTCCCCTCCTAACGGTAACACTGAGTACCCATCCTCTTGGGTGTCAAGTTCTGGCCACTTTGCATTCGGCTTTTACCCTCACGGTTGGCTACGCCATTGGAATATGGCTCAAGTCCGGTGATGGAAACATGACAGTTGTATGGACCGCTAAACGTGACGACCCTCCAATCTCATCTAACTCCACCTTGGAATTAACCGTGGATGGCCTACTTCTCAAGCAAGGGAGTGATGTCCAAGGACAGGTGTATGTGGATACAGAGCCAGCCGGTTTTGCATCCATGCTTAATTCCGGTAACTTTGTGATCTATGCTCAAGAAAGTTCTTCTCCTGTGGCTGTGCCTGTGTGGCAAAGCTTTCATCACCCAACTGACACCATATTAGGAGGCCAGAATTTAACTATTCGGAACCAGCTTGTCTCTAGCATGTCCACTTCAGATCGTTCCACTGGACACTACTTTCTTGCCTTTCAGCGTGATAACGACCTTGTTGCTTATCCCATCAATAGCTCCGCTCAATCTCTTGATGCTTACTGGGCTTCCATTTCCATGAATCTGTACGGGGTGGAACAGTTGAATCTTGACACTGAAGGCAATCTTTGCTTCGACCATGTCTTGCCATGCTTGGTTAATAACAGTAACCACCAAAACCAGCCGCAGAACACTAGTTCTATCTACCGCGCAACTCTTGATGTTGATGGAAACCTGAGATTGTATGAGCACCTATTTGAGGATAAGGAGGGAATTGATATTACAATTTTGTGGAAAGCTAGGAGTGATGAATGCCAAATCAAGGGGTTTTGTGGCATCAACAGTTACTGCTCCAACACAAATGGCAATGCTAGATGCCAGTGTTATCCTGGTTTCGTCCCCTGCAACAACGAAACCACTGGTCGTAATGCCATGTTTCTGGAGTGCAAACTCAACTACAGCAAAGATGATTGCGAAAGGAGTGGTGACCGAAACTTTTTGTTGTATAACATTGTTTCTTTGGAGGAGATGTGGTGGGATGGATACCCATATTGGGCTAAACAGATGAGCATGGGAGCTTGTGAAAAGTCTTGCAAGACAGATTGTGATTGTGGAGCAGCATTATACACAAATGGCCAATGCAACAAATATAGTCTTCCACTCAGATATGGCAGCAAGGCTTCAAATGAATTAGACACAGGGATGGCACTTTTCAAGGTGCCTTCGGGATATGTCTTCAGGGGAAACACTACCACCTCATCTCCCAAGAAACCTAATGCCATTGATAATAACCGGAAAGGTCTGATACTGATTCTAGCCTCTACTTTGGGTTCCATCTCATTTCTCTGTGTGGTCTTTGTTGTGTCTATTTTCTTCACTTATAGGAGCCAAGTTCATAGACTTGCAAAGCTGTCTGCCAGTTCCAAGCTGGGATTCACTGAGGAATGTTCGTTACGCTCGTTTTCCTTTGATGAACTTGTGAAAGCAACTAATGGGTTCACAGAGGAGGTAGGCAGAGGATCTTTCGGAGCAGTTTATAGGGGCACAATAGGAGAGAATAACAGAATAAGGATTGCTGTCAAGCGAATGGAGAGGATTGTTGATGAGGGGGAGAGGGAATTCAGAGCTGAAATTACTGCCATTGCTCGAACTCATCATAGGAATCTGGTTAAGCTCGTGGGCTTTTGTATTGAGGGGTCAAGGAAGCTTCTTGTTTATGAATATGTCAGCAATGGATCTCTGGCGAATCTTCTCTTCAAGACTAAGAAGCATCTTCCATTGAAAGAGAGACTAAAAATTGCATTGGATGTGGCCAGAGGAGTCCAGTATCTACATGAAGAATGTGAAGTTTGTATTGCCCATTGTAATCTGAAGCCTCAAAATATACTAATGGATGAATTACTGACAGCTAAGCTATCTGATTTCGGATTGGCAAGGCTATCAAAGCCGGAATTTTCGAGAAATAGAGCAGACAAGGAGGTTACAACAGGCTACTTAGCACCTGAATGGCAAAAGGAGGCATTGGTATCAATTAAAGCTGATGTTTTCAGTTATGGGATAGTACTGTTGGAGATTGTATGCCGCAGAAGGAATATTGAAGTAAATGTTCCATCACCAGAGGAGGTGCTTCTTTCTACTTGGGCATATCATTGCTTTGCAACTGAGCAGTTACATGATCTTGTGGTTGTGGCTTACCAAGAGGAAGATATGGATTGGAAAACACTGGAACGAATGCTCAAGGTGGGGCTGTTGTGTGTCCAAGACTACCCATCTCTACGTCCTTCAATGAGGGATGTTATTTTGATGTTGGAAGGATGGAAACATATTCCAATTCCCCCATCGCCATCCCCATCCCGCTAG 2337 0.4424 MKLSPLLTVTLSTHPLGCQVLATLHSAFTLTVGYAIGIWLKSGDGNMTVVWTAKRDDPPISSNSTLELTVDGLLLKQGSDVQGQVYVDTEPAGFASMLNSGNFVIYAQESSSPVAVPVWQSFHHPTDTILGGQNLTIRNQLVSSMSTSDRSTGHYFLAFQRDNDLVAYPINSSAQSLDAYWASISMNLYGVEQLNLDTEGNLCFDHVLPCLVNNSNHQNQPQNTSSIYRATLDVDGNLRLYEHLFEDKEGIDITILWKARSDECQIKGFCGINSYCSNTNGNARCQCYPGFVPCNNETTGRNAMFLECKLNYSKDDCERSGDRNFLLYNIVSLEEMWWDGYPYWAKQMSMGACEKSCKTDCDCGAALYTNGQCNKYSLPLRYGSKASNELDTGMALFKVPSGYVFRGNTTTSSPKKPNAIDNNRKGLILILASTLGSISFLCVVFVVSIFFTYRSQVHRLAKLSASSKLGFTEECSLRSFSFDELVKATNGFTEEVGRGSFGAVYRGTIGENNRIRIAVKRMERIVDEGEREFRAEITAIARTHHRNLVKLVGFCIEGSRKLLVYEYVSNGSLANLLFKTKKHLPLKERLKIALDVARGVQYLHEECEVCIAHCNLKPQNILMDELLTAKLSDFGLARLSKPEFSRNRADKEVTTGYLAPEWQKEALVSIKADVFSYGIVLLEIVCRRRNIEVNVPSPEEVLLSTWAYHCFATEQLHDLVVVAYQEEDMDWKTLERMLKVGLLCVQDYPSLRPSMRDVILMLEGWKHIPIPPSPSPSR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00017 778 Gene3D Phosphorylase Kinase; domain 1 453 567 - -
Stsc30268g00017 778 Pfam Protein tyrosine and serine/threonine kinase 492 759 IPR001245 GO:0004672|GO:0006468
Stsc30268g00017 778 Gene3D Transferase(Phosphotransferase) domain 1 568 768 - -
Stsc30268g00017 778 FunFam S-receptor-like serine/threonine-protein kinase 460 567 - -
Stsc30268g00017 778 Pfam S-locus glycoprotein domain 221 293 IPR000858 GO:0048544
Stsc30268g00017 778 FunFam Serine/threonine-protein kinase 125 252 - -
Stsc30268g00017 778 Pfam D-mannose binding lectin 48 140 IPR001480 -
Stsc30268g00017 778 SUPERFAMILY alpha-D-mannose-specific plant lectins 48 183 IPR036426 -
Stsc30268g00017 778 SUPERFAMILY Protein kinase-like (PK-like) 473 766 IPR011009 -
Stsc30268g00017 778 CDD EGF_CA 262 291 - -
Stsc30268g00017 778 SUPERFAMILY Growth factor receptor domain 267 411 IPR009030 -
Stsc30268g00017 778 PIRSF SRK 24 778 IPR024171 GO:0004674
Stsc30268g00017 778 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 774 - -
Stsc30268g00017 778 ProSiteProfiles Protein kinase domain profile. 490 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30268g00017 778 Gene3D - 126 265 IPR036426 -
Stsc30268g00017 778 FunFam Putative receptor-like protein kinase 568 769 - -
Stsc30268g00017 778 ProSitePatterns Protein kinases ATP-binding region signature. 496 520 IPR017441 GO:0005524
Stsc30268g00017 778 ProSiteProfiles EGF-like domain profile. 260 295 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00017 Stsc-Chr30268 86458 88898 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00017 402 769 Receptor kinase-like Gene Family AT4G29050 33.596 2.20e-58 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc30268g00017 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00017 - - adu:107471486 845.499