Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00015 ATGCGTGAGAGTCAGTCAGCTCATTTAATGGAGCCTGAGCCTTACATAACTCTTGTGTTTTGCCAAGTGAGTTCATCACTTAAGGATCATTCTCATTTCAGAATAATTAAGACTCCACAAATTCCTATGGCTTCAACATCTGCTGCTCTCTTATTGCTGGTGTTGTTGATGCTATTTGCAAATGAAGCCACCTCTGCGACAAACACAAACTACACCCATCACATTCCAACAGGGTCTTGGCTCTCTTCTACAGGCAAACATACTTCATGGCCATCACCATCTGGTCTCTTTGCTTTTGGCTTTTACCCCCGTGGTAACAGCTATGCTGTTGGAATATGGCTGCTTACTCAACCTAACCACACAATTGTGTGGACTTACAATCATCCTGCTTCATCAGTGTCTTCAAATTTCACACTGAGATTAACCAAAGAACACGGGCTACTTCTTCATCAAGGAACTGAAGACCCAAGTTTTCTCAATTCATATTTTATTTACTATCCTGCTCTTGGAATGGAAGTCGTTTCGGCATCTATGCTTGATTCTGGCAACTTTGTGCTCTATGATAAGGACTTTAATATGTTATGGCAAAGTTTTGATTACCCTGGGGACACCATATTAGGAGGCCAGTATTTAATGGATGTAGCAAGCCTGGTCTCTAGTGTATCAGAATCAGACCATTCCAGTGGACATTTTTTGCTAAGGAGGATGGGAAAGGGGGAGGAAAACCTTGCTGCTTGCCGTGTGAACAGCACATGTGAACCGGAGGATGTTTATTGGGTTAAAAAGGCATACTTTGAAGATTATGCTTCTGCACTACTCAGTCTTAGCATTGAAGGTTCACTTTGCCTAAAAGATGATGTCTCTGGTTCTGAACTAGCGTGTTTGGCTACTAGCAAGAACCTTAAACACAAGCCAAAGAACACAACTTTTATCTACCGTGCTACTCTTGATGAAGATGGGAACTTCAGATTGTATGCTCACCAATTTGAGGGAAACACTAGCTCAAGTGTGCGAGTGCTGTGGGAAGCCGTGAAGGATAAATGTCAAGTCCCGCTTTGTGGCTTGAACAGTTACTGCTCCATCACGAGTGGTGAAGCCATGTGTCAGTGTTTTCCCGGTTTCATCCCCATCAAGAGTGGTGGTAACGGTACCTGGTTTCTAGACTGTGAACAGAACCACAACAAAGATATTTGTGAGAGCATAGAAGACCCAACAATGATGTACAATGTGACCTCCTTGAAGGATATCTACTGGGGTGGTTCTCCTTATTTGGTTGTGCCAATGGAGATGGAAACTTGCAAGAAGTCTTGTTGGATAGACTGCGACTGCTGGGCGGTGTTATATAAGAGGGGCATCTGCGAAAAATATAAGCTTCCACTTCTATATGGCAGAAGTTCTAAAGATGCTTCAACAATGGCCTTCTTGAAGATGCCTTCAGGAATTGTCCCAAGTCCTAGTTCAAACCCAACTACCCTATCTCCAAGGAAGCCCTCTGTCTTTGTTGATGACAAGAAAAGGCTTATAATGATTCTGTCCTTTACTCTGGGTTGGATTTTGATTCTCGGTTTGGTCTTTGTATTGTGTACTTTCATCATTTACAGGCGTCAAGTTCAAAGGTATGCAATATTATCTGCCAGTGAAAATCTGGGATTTGTGGAGGAGTGTTCCTTGCGTTCATTTTCTTTTGATGAACTTGTGAAATCAACTGGAGGCTTCGCGGAGGAGATAGGCAGAGGATGTTTTGGAGCGGTTTATAGAGGTACAATAGGTGACAGTAACAGAAGGGTTGCTGTGAAGAGACTTGAGAAATTTGTTGATCAAGGGGAGAGGGAATTCCAAGCAGAAATCACTGCTGTTGCTCAAACTCATCATCGGAATCTGGTGAAGCTCATTGGTTTCTGTATTGATGGATCTAGGAAGCTTCTTGTTTTTGAATATCTCAGCAACGGGTCTCTTGCAGATCTTCTCTTCAAGTCTCATATGACTATGGCTTGGAAAGAGAGATTAAAGATTGCATTAGATGTGGCTAGAGGCATCTTGTATTTGCATGAGGAGTGTGATGTTCGGATTATCCACTGCAACATAAAGCCTCAGAATATACTTATGGATGAAGCGTGGACTGCAAAGATATCTGATTTTGGTTTCGCAAGGCTGTTGAAACCCAACTATTCAAGAATGATGAAGGAAATGAATGACAAGAGAAGTAGGTACTTGGCACCTGAATGGCAGAAGGATGAATCAGTGTCAGTTAAAGCTGATGTTTATAGTTTTGGGGTGGTGTTATTGGAGATTGCATGCCGTAGAAGCAGCTTTGATATGACTGCTGCATCACCGGAAGAGATAGTTCTTTCCAGCTGGGTATATAAATGCTATGCGGCAGGGCAGTTGAATAAGCTTGTGGCAGATGATGAAGGCGAAGATGTGGTAGGTTGGAAAATACTGGAAAGAATGGTGAAGTTGGGGTTGTGGTGTGTTCAAGACAAACCATCTCTTCGTCCCACAATGAAGGATGTGATCTTAATGTTGGAAGGACTGAAAGATATCCCGGTTCCTCCCTCTCCAGCTTTCTTTGTTGAATAA 2580 0.4267 MRESQSAHLMEPEPYITLVFCQVSSSLKDHSHFRIIKTPQIPMASTSAALLLLVLLMLFANEATSATNTNYTHHIPTGSWLSSTGKHTSWPSPSGLFAFGFYPRGNSYAVGIWLLTQPNHTIVWTYNHPASSVSSNFTLRLTKEHGLLLHQGTEDPSFLNSYFIYYPALGMEVVSASMLDSGNFVLYDKDFNMLWQSFDYPGDTILGGQYLMDVASLVSSVSESDHSSGHFLLRRMGKGEENLAACRVNSTCEPEDVYWVKKAYFEDYASALLSLSIEGSLCLKDDVSGSELACLATSKNLKHKPKNTTFIYRATLDEDGNFRLYAHQFEGNTSSSVRVLWEAVKDKCQVPLCGLNSYCSITSGEAMCQCFPGFIPIKSGGNGTWFLDCEQNHNKDICESIEDPTMMYNVTSLKDIYWGGSPYLVVPMEMETCKKSCWIDCDCWAVLYKRGICEKYKLPLLYGRSSKDASTMAFLKMPSGIVPSPSSNPTTLSPRKPSVFVDDKKRLIMILSFTLGWILILGLVFVLCTFIIYRRQVQRYAILSASENLGFVEECSLRSFSFDELVKSTGGFAEEIGRGCFGAVYRGTIGDSNRRVAVKRLEKFVDQGEREFQAEITAVAQTHHRNLVKLIGFCIDGSRKLLVFEYLSNGSLADLLFKSHMTMAWKERLKIALDVARGILYLHEECDVRIIHCNIKPQNILMDEAWTAKISDFGFARLLKPNYSRMMKEMNDKRSRYLAPEWQKDESVSVKADVYSFGVVLLEIACRRSSFDMTAASPEEIVLSSWVYKCYAAGQLNKLVADDEGEDVVGWKILERMVKLGLWCVQDKPSLRPTMKDVILMLEGLKDIPVPPSPAFFVE 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00015 859 SMART blect_4 81 201 IPR001480 -
Stsc30268g00015 859 Pfam Protein kinase domain 574 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30268g00015 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 108 326 IPR036426 -
Stsc30268g00015 859 Gene3D - 68 200 IPR036426 -
Stsc30268g00015 859 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 81 854 - -
Stsc30268g00015 859 ProSiteProfiles Protein kinase domain profile. 570 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30268g00015 859 PIRSF SRK 42 859 IPR024171 GO:0004674
Stsc30268g00015 859 ProSitePatterns Protein kinases ATP-binding region signature. 576 599 IPR017441 GO:0005524
Stsc30268g00015 859 Gene3D Transferase(Phosphotransferase) domain 1 647 849 - -
Stsc30268g00015 859 CDD STKc_IRAK 576 845 - -
Stsc30268g00015 859 SUPERFAMILY Protein kinase-like (PK-like) 554 843 IPR011009 -
Stsc30268g00015 859 FunFam Putative receptor-like protein kinase 647 850 - -
Stsc30268g00015 859 FunFam S-receptor-like serine/threonine-protein kinase 541 646 - -
Stsc30268g00015 859 Pfam S-locus glycoprotein domain 300 376 IPR000858 GO:0048544
Stsc30268g00015 859 Pfam D-mannose binding lectin 121 211 IPR001480 -
Stsc30268g00015 859 ProSiteProfiles Bulb-type lectin domain profile. 72 199 IPR001480 -
Stsc30268g00015 859 Gene3D Phosphorylase Kinase; domain 1 536 646 - -
Stsc30268g00015 859 Gene3D - 203 345 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00015 Stsc-Chr30268 75543 78252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00015 485 854 Receptor kinase-like Gene Family AT4G18250 37.076 1.21e-62 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc30268g00015 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00015 - - aip:107630435 1313.52