Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00013 ATGGCTTCTAAATCCCTCATTCTCATTGTTCTTCTATCTCTGTCCTCTTCCTCTATGCTACTTGCAGATGCAAAGGAGGAAATAGCCAAGATTGAGTTGGGTAATTCCCTCTCTCCAAAAGGAAACCAATCTTCATCATGGTTATCAAGTTCAGGCCATTTTGCATTTGGATTTTACCCTCATCCTCATGGCTATGGCTATGCTCTTGGTATATGGCTGCTTGGTGAGCCTGACATCACTCTAGTATGGACTGCTAACCGTGAAGATCCGCCGCTACCTTCTACCTCCACCTTGCAATTGACCATTGATGGCTTGGTTCTTCAACAAGGACAAAACATTACTAGTAACATCACAGGAGCTTCTATGGCATCCATGCTGGATTCTGGAAACTTTGTGATCTATGATGCTTCCAATGTTGTTGTGTGGCAAAGCTTTGATCATCCAACTGATACCATTTTAGGAGGTCAGAACTTAACTGCAACAAACAGATTGGTCTCTAGTTTGTCCAAAACAGACCATTCCACTGGACTTTTCTATCTTATCATGCAAGAATCAGATAGCAGTCTTGTTGCTTATCCCCTCAGAACCTTACCATATGGTGAGGATCACTACTGGGCTTACATTGATAATGCTACTACCGGTTCTGTGCAGTTGAGTCTTACCATGGAAGGATTTCTTTGCCTAAGAGATCTTCAATGTTTTGTTAACAACACAAACTTGTTGAGAAACAAGTCAAAGAAAGAGAACACAACTTCAATATACCGGGCAACACTTGATTTTGATGGGGTTTTCAGATTGTATGAACACCAATTTGATGCTGAGGGAAACAGAATGCCAAAAAGTGTTCAAATTAGGTGGGAAGCCTTGCATGACAAATGCCAAGTCAATGGGTTTTGTGGCTTCAACAGTTACTGCTCCAACACCAGCATGTGCCACTGTTATCCTGGTTTTGTCCCCATCAGCAGCAACAATGGCATGTTTCTGGAATGCAAACTGAACTACAGCAAAGATGAATGTCAAACTAATGCTGACCCATCTTTGCTGTACGATGTTACTCTCTTGGAAGACATGTCATGGAGTGATTTCCCATATTTGGTTACAAAAGGAACAACCATTGAAGCATGTGAGGATTCTTGCAAGGAAGATTGTGATTGTGGGGGAGCATTGTATGCAGATAATGGTATCTGCAGCATATACAGGCTTCCACTCAGATATGGCAGAAAGGTTCCAAATGCAAATAACACAGCCACAGCAATTTTCAAAGTGGCTTATCATTCAGGATTTCTTATTAACCAAACACATACAGATTCGGATCCCCATGTTGTTGTTGATAACAAGAGAAGCCTAATACTGATTCTATCATCTTCTTTGTGTTCAGTTTCTTTGCTATGTGTGATCTTTGCTGTGTCTGTTTTCTTCAATTATAGGCATCATGTTTATAGTTATGCAAAGCTTTCTGCAAGCTCAAACCTGGGATTTACCAAGGAATGTTCACTGCGTTCGTTTTCCTTTGATGAACTTGTGAAAGCAACTAATGGATTCACGGAAGAGATAGGAAGAGGGTCTTATGGAGCAGTATATAAAGGAACAGTAACAGGTGATGGTAGTAACAAAATTGTTGCTGTGAAGAGACTAGAGAGGATTGTTGATGATGAAGGGGAGAGGGAATTCCGAGCTGAAGTTACTGCCATTGCTAGAACTCACCATAGGAATCTGGTTAAGCTTGTTGGGTTCTGTATTGAAGGGTCAAGGAAGCTTCTTGTTTATGAATATGTTAGCAATGGCTGCCTGGCGAATCTTCTTTTTAAGGGAAAGAAGCATCATCATCAAGTGGCACTGCCATTGAAAGAGAGGATCAAGATTGCATTGGATGTAGCCAGAGGAGTGCAGTATCTGCATGAAGAGTGCAGAGTGAGAATCGTGCATTGCAATCTAAAGCCACAAAATATATTGATTGATGAAGCATGGACAGCAAAGATATCTGATTTTGGATTAGCAAGGCTGTTGAAGCAGCCTCAACAATCAGGGCTATTAACTAATGATGAAGATGATGAGGTAAGAAGCGGTTACTTGGCACCTGAATGGAAGAAGGAGGCATCATCGTCACCATCTTCATCTTCATGTTCATCTCCTTTGGTGTCAGTGAAAGCTGATATATACAGCTATGGAGTTGTGCTGTTGGAGATAGTGTGCAGAAGAAGGAGTATAGAAGTAAACGTGAAGTGTGGAGAGGAGGTTCTTCTTTCAAGTTGGGTGTATCAGTGTTATGCAGAAGGAGAGTTGAGGAAGCTTGTTGTTAATGAAGCTGAAGATGAGGATGGTATAGATTGGAAGACATTAGAGAGAATGGTGAAGGTGGGGTTATGGTGTGTGCAGGAAGATCCAACACTGCGTCCTTCAATGAAGAACGTTATCTTGATGTTGGAAGGATGGAAACCCATTCCAACTCCTCCATCCCCTCTCTTGCTTTAA 2472 0.4159 MASKSLILIVLLSLSSSSMLLADAKEEIAKIELGNSLSPKGNQSSSWLSSSGHFAFGFYPHPHGYGYALGIWLLGEPDITLVWTANREDPPLPSTSTLQLTIDGLVLQQGQNITSNITGASMASMLDSGNFVIYDASNVVVWQSFDHPTDTILGGQNLTATNRLVSSLSKTDHSTGLFYLIMQESDSSLVAYPLRTLPYGEDHYWAYIDNATTGSVQLSLTMEGFLCLRDLQCFVNNTNLLRNKSKKENTTSIYRATLDFDGVFRLYEHQFDAEGNRMPKSVQIRWEALHDKCQVNGFCGFNSYCSNTSMCHCYPGFVPISSNNGMFLECKLNYSKDECQTNADPSLLYDVTLLEDMSWSDFPYLVTKGTTIEACEDSCKEDCDCGGALYADNGICSIYRLPLRYGRKVPNANNTATAIFKVAYHSGFLINQTHTDSDPHVVVDNKRSLILILSSSLCSVSLLCVIFAVSVFFNYRHHVYSYAKLSASSNLGFTKECSLRSFSFDELVKATNGFTEEIGRGSYGAVYKGTVTGDGSNKIVAVKRLERIVDDEGEREFRAEVTAIARTHHRNLVKLVGFCIEGSRKLLVYEYVSNGCLANLLFKGKKHHHQVALPLKERIKIALDVARGVQYLHEECRVRIVHCNLKPQNILIDEAWTAKISDFGLARLLKQPQQSGLLTNDEDDEVRSGYLAPEWKKEASSSPSSSSCSSPLVSVKADIYSYGVVLLEIVCRRRSIEVNVKCGEEVLLSSWVYQCYAEGELRKLVVNEAEDEDGIDWKTLERMVKVGLWCVQEDPTLRPSMKNVILMLEGWKPIPTPPSPLLL 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00013 823 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 819 - -
Stsc30268g00013 823 Gene3D - 29 147 IPR036426 -
Stsc30268g00013 823 CDD B_lectin 54 148 IPR001480 -
Stsc30268g00013 823 SUPERFAMILY Protein kinase-like (PK-like) 494 811 IPR011009 -
Stsc30268g00013 823 ProSiteProfiles Protein kinase domain profile. 512 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30268g00013 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 192 IPR036426 -
Stsc30268g00013 823 Pfam D-mannose binding lectin 80 161 IPR001480 -
Stsc30268g00013 823 ProSitePatterns Protein kinases ATP-binding region signature. 518 543 IPR017441 GO:0005524
Stsc30268g00013 823 SMART blect_4 38 148 IPR001480 -
Stsc30268g00013 823 Pfam Protein tyrosine and serine/threonine kinase 514 805 IPR001245 GO:0004672|GO:0006468
Stsc30268g00013 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Stsc30268g00013 823 FunFam Serine/threonine-protein kinase 148 279 - -
Stsc30268g00013 823 ProSiteProfiles Bulb-type lectin domain profile. 34 193 IPR001480 -
Stsc30268g00013 823 FunFam S-receptor-like serine/threonine-protein kinase 482 591 - -
Stsc30268g00013 823 Gene3D Transferase(Phosphotransferase) domain 1 592 812 - -
Stsc30268g00013 823 Gene3D - 149 288 IPR036426 -
Stsc30268g00013 823 Gene3D Phosphorylase Kinase; domain 1 477 591 - -
Stsc30268g00013 823 FunFam Putative receptor-like protein kinase 592 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00013 Stsc-Chr30268 64164 66723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00013 374 822 Receptor kinase-like Gene Family AT4G18250 31.789 7.59e-57 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc30268g00013 PK_Tyr_Ser-Thr 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00013 - - adu:107471486 1402.88