Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00004 ATGGATGGGAACAAGGACGACGCGCTCAAATGCCTGAAAATTGGGAAACAAGCGTTAGAATCTGGGGATCGAAACCGCGCCTTGAAGTTCCTTACCAAGGCTCGCCGCCTCGACCCAACGCTTCCCATCGACGACCTTTTATCGGCCGCAGAAGGCACTGCAGCCGCCGAGTCAAACCCTAATTCGCGAGTCGAAACGCCAGCGACAACCCCTGAGGTTCGTTCCAGCGGATCGTCGCCAAAATCGAACGCGAACGATCAACCCTCAGTCCGGCGTAGGGTTTCCGCAGCTGAGCCCTCTTCGTCTTCATCATCCGGATCATATACGGAGGAGCAAATCACTCTGGTTAGAGAGATTCGGAGGAAGAAGAACTATTACGAGATTCTAGGGTTGGAGAAGAGTTGCACTGTGGAGGACGTGAGAAAAGCGTATAGAAAACTCTCCCTGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCTGAAGAAGCCTTCAAGTCCGTTTCAAAGGCGTTTCAGTGTCTCAGCAATGATGAAAATAGGAGAAAGTATGATCTTGCCGGAGAAGATGAGTCCCTCTTCGAGCAGCGGGCTGCAGCCAGGCCAGGCCCGAGGGCCTATCGCCATGGGTCTTATCCTTATGAGTTTCGGTTCATTACCCCGAAGGGTGTTCACTACTATGTTAAGTCAAGCAAGTTCAATGAGGTTTATCCTATAGGTAGCACTGAACGGACTGCACTTGAAGAAAGGGTTGAGAGTGAATACATCAGCATTCTTCGGCAGAATTGTCGTCTTGAGGTGCAGCGTCACCAATGGGGCTACATCCGAGAAAAGCCACACTGTGAGATGCTCCAGAAGTTTGATTCAGTGAATTGA 876 0.5091 MDGNKDDALKCLKIGKQALESGDRNRALKFLTKARRLDPTLPIDDLLSAAEGTAAAESNPNSRVETPATTPEVRSSGSSPKSNANDQPSVRRRVSAAEPSSSSSSGSYTEEQITLVREIRRKKNYYEILGLEKSCTVEDVRKAYRKLSLKVHPDKNKAPGAEEAFKSVSKAFQCLSNDENRRKYDLAGEDESLFEQRAAARPGPRAYRHGSYPYEFRFITPKGVHYYVKSSKFNEVYPIGSTERTALEERVESEYISILRQNCRLEVQRHQWGYIREKPHCEMLQKFDSVN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00004 291 ProSitePatterns Nt-dnaJ domain signature. 165 184 IPR018253 -
Stsc30268g00004 291 PRINTS DnaJ domain signature 144 159 IPR001623 -
Stsc30268g00004 291 PRINTS DnaJ domain signature 126 144 IPR001623 -
Stsc30268g00004 291 PRINTS DnaJ domain signature 160 180 IPR001623 -
Stsc30268g00004 291 Pfam DnaJ domain 124 185 IPR001623 -
Stsc30268g00004 291 Gene3D DnaJ domain 98 184 IPR036869 -
Stsc30268g00004 291 ProSiteProfiles dnaJ domain profile. 124 188 IPR001623 -
Stsc30268g00004 291 MobiDBLite consensus disorder prediction 54 112 - -
Stsc30268g00004 291 CDD DnaJ 124 177 IPR001623 -
Stsc30268g00004 291 SMART dnaj_3 123 180 IPR001623 -
Stsc30268g00004 291 MobiDBLite consensus disorder prediction 48 112 - -
Stsc30268g00004 291 Pfam Domain of unknown function (DUF1977) 214 271 IPR015399 -
Stsc30268g00004 291 PANTHER AT29763P-RELATED 210 286 - -
Stsc30268g00004 291 SUPERFAMILY Chaperone J-domain 95 184 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00004 Stsc-Chr30268 13747 15170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00004 119 185 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.437 1.57e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00004 K09518 - cave:132165381 259.225