Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30268g00002 ATGGAACGCCGTCCAAATCCCACTCGCTACCCTCAAAACAATGCTTTCCCTTCTTACCCCTTCTCCGACGACGCATACAACCCTTCTTATTCCCCCAAGCCACGTGGCAGGGGACGTGGCGGTTACTCCACCGCCTCTTCCGTTGCTCGCGGACGTGGCCGCTGCTCTTCCCGCCAACAACACCACCCTTCTTCCAACTCGAATAACCGCTTCCCCATCCACATTTCGCAAGACTTCAACCACCTTGACCTCAACGCTGAAGATGACACCGCCGCCGGCGCTGGCGCCGGGGGAATCAACTTCGACGCGTACGAATCTGTGCCGGTGGAGGTTAGCGGCGATGAAGTTCCCCCGCCGGTGGAATCGTTCGCGGAAACCGATTTCCCCCCGGCGCTGAAGACGAACATCGAGCGGTGCAAGTACGTGAAGCCCACGCCGATTCAGCGCCACGCCATTCCCATTGCTTCCGCTGGCCGTGACTTGATGGCGTGCGCGCAGACCGGGTCCGGTAAAACGGCGGCGTTTTGCTTCCCGATCATTTCTGGTATTCTCAAGAATCGTCGTCCGGGGTTTTCTTCTGTGGTTCTTGATCGTGGCGGCGGCACTGTTTCATATCCAACGGCACTCATTCTTTCACCTACTCGAGAATTATCCTGCCAGATACATGATGAAGCTAAGAAGTTTGCTCATCAAACTGGAGTGAAGGCTGTTGTTGCTTATGGTGGAGCTCCAATTTTTCATCAGCTCCGGAATTTAGAGAAGGGGGTTGATATACTTGTTGCTACTCCTGGGAGGTTGGTGGATATTATTGAAAGAGGGAAGGTTTCTTTGACAAGGATAGAGATTCTTGCTTTGGATGAGGCTGATCGTATGTTAGACATGGGGTTTGAGCAGCAGATACGCAAGATTGTTGAGCATATGAACATGCCTCCACCTGGTGTTAGGCAAACTATGCTTTTCAGTGCTACATTCCCTGATGACATTCAGAAGCTTGCATCTGACTTTCTATCAAACTACATATTCTTATCTGTTGGAAGGGTTGGTTCTAGCACTGAACTTATTGTGCAGAAAGTTGAATATGTTGAAGATACTGAAAAAATTAACCATCTAATGGATCTACTCCATTCTCAAAATGCACGTGGTGCCAATAAGAAGCCAGCTCTGACTCTTGTATTTGTTGAAACAAAGAGGGGAGCGGATAATTTAGAACACACCTTGACGAGAAATGGGTTTCCTGCTATTGCAATACATGGTGATAAAGTTCAAATGGAAAGGGAACGAGCTTTAAGATCGTTCAAAAAAGGTGTGACTCCTATCATGGTGGCAACAGATGTTGCTTCTAGAGGTTTGGATATCCCGCATGTGGCTCATGTCATCAACTATGATTTACCAAGAAACATTGATGACTATGTGCATAGAATTGGCAGAACTGGCCGTGCTGGCAAATCTGGTTTTGCCACTGCCTTCTTCAGCTACAAGAACAATCATCTTGCGAAGCCTCTTGTTGACCTCTTGCAGGAAGCAAAACAAGAAATTCCTTCTTGGCTGAGCCAATACACTGATGAGGCTCCACGATACGATGGCAATGGTGGTAGCCATCGATCTCAGCGTTATGGTAGTGGAAAGTATGGTGGTCGTGACTTCCGAAATGTTACTGATCCTGAAGTGGAGAATTATGATAACCACTCCAATGGATATGCTGATTCATCATCTTATGAGATGGCAAATTCAGCTCCTGCTGCTGCTAGTTGTCATGATACTTATGCCAATGCTGAATTGTATGGAGGGAGCAAGGTTGAAGATGGGCCAGGAGGTTATGCATCGATTGTTCCCACTGGATGGGACTAG 1848 0.4821 MERRPNPTRYPQNNAFPSYPFSDDAYNPSYSPKPRGRGRGGYSTASSVARGRGRCSSRQQHHPSSNSNNRFPIHISQDFNHLDLNAEDDTAAGAGAGGINFDAYESVPVEVSGDEVPPPVESFAETDFPPALKTNIERCKYVKPTPIQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKNRRPGFSSVVLDRGGGTVSYPTALILSPTRELSCQIHDEAKKFAHQTGVKAVVAYGGAPIFHQLRNLEKGVDILVATPGRLVDIIERGKVSLTRIEILALDEADRMLDMGFEQQIRKIVEHMNMPPPGVRQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVEYVEDTEKINHLMDLLHSQNARGANKKPALTLVFVETKRGADNLEHTLTRNGFPAIAIHGDKVQMERERALRSFKKGVTPIMVATDVASRGLDIPHVAHVINYDLPRNIDDYVHRIGRTGRAGKSGFATAFFSYKNNHLAKPLVDLLQEAKQEIPSWLSQYTDEAPRYDGNGGSHRSQRYGSGKYGGRDFRNVTDPEVENYDNHSNGYADSSSYEMANSAPAAASCHDTYANAELYGGSKVEDGPGGYASIVPTGWD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30268g00002 615 CDD SF2_C_DEAD 354 490 - -
Stsc30268g00002 615 SMART helicmild6 400 481 IPR001650 -
Stsc30268g00002 615 Pfam DEAD/DEAH box helicase 145 331 IPR011545 GO:0003676|GO:0005524
Stsc30268g00002 615 CDD DEADc_DDX3_DDX4 122 348 IPR044763 GO:0003724|GO:0005524
Stsc30268g00002 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 520 IPR001650 -
Stsc30268g00002 615 MobiDBLite consensus disorder prediction 1 73 - -
Stsc30268g00002 615 FunFam ATP-dependent RNA helicase RhlB 345 523 - -
Stsc30268g00002 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 496 IPR027417 -
Stsc30268g00002 615 MobiDBLite consensus disorder prediction 523 545 - -
Stsc30268g00002 615 Gene3D - 79 343 IPR027417 -
Stsc30268g00002 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 342 IPR014001 -
Stsc30268g00002 615 Pfam Helicase conserved C-terminal domain 365 481 IPR001650 -
Stsc30268g00002 615 Gene3D - 344 523 IPR027417 -
Stsc30268g00002 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 519 - -
Stsc30268g00002 615 MobiDBLite consensus disorder prediction 49 73 - -
Stsc30268g00002 615 FunFam Probable ATP-dependent RNA helicase DDX4 84 344 - -
Stsc30268g00002 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Stsc30268g00002 615 SMART ultradead3 140 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30268g00002 Stsc-Chr30268 6769 9463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30268g00002 119 524 Eukaryotic Initiation Factors Gene Family AT3G19760 31.941 1.38e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30268g00002 K11594 - gmx:100791226 729.169