Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30267g00016 ATGGATATCGAGGAGGACATTCGATCTTTACAGCTTGAATCTGCAGAAGAAGAGACTAATGGACCTGTAAATCCAGAGGATGTGAAGCTAGACGAAGTTGATAAATCTGAACATATGGATGAAGATCCAAAACCGGAAGTTGAAACACAACCTATCCATGTTGAACCAAAAGCGAAAGAGAAGGAAACTCCTCCTGCGCAGGATGATGACGAGGCAGAGATAACGAAAAAAAGGCACTTAAATGTTGTGTTTATTGGTCACGTAGATGCTGGTAAGTCCACAACAGGTGGTCAGATACTGTTTCTAAGTGGCCAGGTTGATGAAAGAACTATCCAAAAATATGAGAAAGAAGCTAAAGACAAAAGCAGAGAAAGCTGGTATATGGCTTATATTATGGATACAAACGAGGAGGAGAGAGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCTTCTCAGGCTGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACATTGGGGGTGGCTAAATTGCTTGTTGTTGTCAATAAAATGGATGAGCCTACTGTTAAATGGTCTAAAGAAAGGTATGATGAAATTGAGTCCAAAATGACACCATTTCTAAGACAATCAGGATACAATGTGAAAAAAGATGTCATTTTTCTACCAATATCTGGGTTGGTTGGTGCAAATATGAAGACCAGAGTGGATAAAAACATTTGTCCATGGTGGAATGGCCCATGCTTATTTGAAGCTCTTGACGCTGTTGAAGTTCCTGAGCGAGACCCCAAAGGCCCCTTTAGGATGCCTATAATCGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAGTCTGGAACCGTTTGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGCTCATGTAAAAGTTGTTGCTATATTTATCGATGAGGATAAGGTCAGACGTGCTGGACCCGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATCAAGTGGGTTTGTTCTATCAAGTGTTGCAAATTCAATACCAGCTGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCGGGGTACAAGGCTGTTTTGCACATCCACTCTGTTGTTGAAGAATGTGAGATTATTGAGCTCTTACATCAAATTGATCCAAAAACAAGGAAACCTATGAAAAAGAAGGTTCTGTTTGTGAAGAACGGTGCTAATGTTGTGTGTCGAATTCAGGTTAATAGCATGATATGCGTTGAGAAGTTCTCTGATTTCCCACAACTTGGGAGATTTACTCTTCGCAGTGAAGGAAAAACTGTTGCTGTGGGGAAGGTTACTGCTCTGTAA 1512 0.4034 MDIEEDIRSLQLESAEEETNGPVNPEDVKLDEVDKSEHMDEDPKPEVETQPIHVEPKAKEKETPPAQDDDEAEITKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMTPFLRQSGYNVKKDVIFLPISGLVGANMKTRVDKNICPWWNGPCLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVCEGDSLLVMPNKAHVKVVAIFIDEDKVRRAGPGENLRIRLSGVEEEDISSGFVLSSVANSIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGANVVCRIQVNSMICVEKFSDFPQLGRFTLRSEGKTVAVGKVTAL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30267g00016 503 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 Pfam Elongation factor Tu GTP binding domain 77 282 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 Pfam Elongation factor Tu C-terminal domain 394 502 IPR004160 -
Stsc30267g00016 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 312 IPR027417 -
Stsc30267g00016 503 Gene3D - 58 302 IPR027417 -
Stsc30267g00016 503 SUPERFAMILY Translation proteins 300 392 IPR009000 -
Stsc30267g00016 503 Gene3D Translation factors 306 391 - -
Stsc30267g00016 503 CDD eRF3_II 308 389 - -
Stsc30267g00016 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Stsc30267g00016 503 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Stsc30267g00016 503 MobiDBLite consensus disorder prediction 22 75 - -
Stsc30267g00016 503 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 57 301 - -
Stsc30267g00016 503 FunFam Putative translation elongation/initiation factor family protein 395 503 - -
Stsc30267g00016 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 502 IPR009001 -
Stsc30267g00016 503 Gene3D Translation factors 396 503 - -
Stsc30267g00016 503 MobiDBLite consensus disorder prediction 1 75 - -
Stsc30267g00016 503 PANTHER TRANSLATION FACTOR 69 502 - -
Stsc30267g00016 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 306 IPR000795 GO:0003924|GO:0005525
Stsc30267g00016 503 CDD eRF3_C_III 395 503 - -
Stsc30267g00016 503 CDD EF1_alpha 81 302 - -
Stsc30267g00016 503 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 305 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30267g00016 Stsc-Chr30267 95056 103304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30267g00016 77 503 Eukaryotic Initiation Factors Gene Family AT5G60390 37.587 3.32e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30267g00016 K03267 - gmx:100793653 877.085