Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30267g00003 ATGGTAGACGTGGATCCATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGCGAGGTTCTTGGTGAAGGTACCTATGGAGTTGTCTACAAAGCCATCGATACACAGATGGGGCAGACGGTCGCAATTAAGAAGATTAGGCTTGGGAAGCAGAAAGAAGGAGTGAATTTTACAGCTCTTAGAGAAATAAAACTGCTCAAAGAGCTCAAAGATCCAAATATTATTGAGTTGATTGATGCATTCCCGCACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGACCTTGAAGCTGTTATAAGGGACAGAAATATTTTTCTTTCGCCGGGGGATATCAAATCTTACCTTCAGATGACACTAAAAGGTCTTGCGGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCACGGATATTCGGAAGCCCAGATCGCAGGTTCACCCATCAGATGCTATCTATTGCATTGGTTATTCATTTGTTTCTGAATGCTGAGGCTAGTGTTTTATTGACTGTTTTAAACATTTTGCAGGGTTCAAGTGATATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACTCCATCACCATCTCAGTGGCCAGACATGGTATATCTTCCTGACTATGTTGAATACCAACATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCCAGCGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACGTATGATCCAAATGCTAGAATTTCAGTTCAGCAGGCATTAGAACATAGGTATTTCACTTCCGCACCTCTGCCCACAGTTCCAGAGAAGCTTCCAAGACCTGCCCCGAAGAAGGAATCTAAAGCCTCGGATTCCAATTCACAAGACGGTCCTACTGTGTTATCACCTCCGAGAAAGTCAAGGAGAATTATGCCAGGGCATGATGGATTTGAAGGAAGTTCTTTGCAGGAAGATAAGTTTGATGACAACGCTGGTAATTTCCGGCAGACAGTTGCTGATAATGCGGGAAAGAATGAACCAGCACCGATGTCTCTAGATTTTTCTCTTTTCGGATTAAAACCTCCAAATAGACCTACAATTACAAGTGCTGACAGATCGCACTTAAAAAGAAAATTAGATTTGGAATTCGGCAGCCAGAATGACTAA 1206 0.4179 MVDVDPSKKVADRYLKREVLGEGTYGVVYKAIDTQMGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQMLSIALVIHLFLNAEASVLLTVLNILQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQQALEHRYFTSAPLPTVPEKLPRPAPKKESKASDSNSQDGPTVLSPPRKSRRIMPGHDGFEGSSLQEDKFDDNAGNFRQTVADNAGKNEPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEFGSQND 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30267g00003 401 ProSiteProfiles Protein kinase domain profile. 14 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30267g00003 401 SUPERFAMILY Protein kinase-like (PK-like) 10 286 IPR011009 -
Stsc30267g00003 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc30267g00003 401 SMART serkin_6 14 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30267g00003 401 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Stsc30267g00003 401 CDD STKc_CDK7 13 292 IPR037770 GO:0005675|GO:0008353|GO:0070985
Stsc30267g00003 401 Gene3D Transferase(Phosphotransferase) domain 1 187 295 - -
Stsc30267g00003 401 Gene3D Transferase(Phosphotransferase) domain 1 95 178 - -
Stsc30267g00003 401 FunFam Cyclin-dependent kinase D-1 5 94 - -
Stsc30267g00003 401 Pfam Protein kinase domain 16 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30267g00003 401 MobiDBLite consensus disorder prediction 321 344 - -
Stsc30267g00003 401 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Stsc30267g00003 401 PANTHER CELL DIVISION PROTEIN KINASE 192 285 - -
Stsc30267g00003 401 MobiDBLite consensus disorder prediction 284 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30267g00003 Stsc-Chr30267 30314 34256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30267g00003 8 396 Core Cell Cycle Gene Families AT1G73690 67.574 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Stsc30267g00003 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30267g00003 K02202 - gmx:100814263 661.373