Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00031 ATGGCTCTGCATGCTTCCTTATCTTCCTCTTCCTTCAACTATGGATGGACCTTCGATGTCTTCCTCAGCTTCAGAGGAATTGATGCTCGCCATGGTTTCACCGGCAATCTCTACAATATTCTCCATGCCAAGGGAATCCAAACCTTCTTTGATGATGATAAGCTTCCAAGAGGAACTCAAATCACTCCATTTCTCTCTAGCGCAATTGAAAATTCCAGGATCGCCATCGTTGTGCTCTCTCAAAATTACGCTGCTTCTTCGTTTTGCTTAGATGAACTCACTACCATCTTGGAGTGCGTTAAGGGGAACGGCCGGTTGGTTCTTCCAATTTTTTACGATGTGGATCCTTCCGATGTGAGACATCAGAGGGGGAGTTATGGAGAAGCCCTAGCTAGGTTTGAAGAGAGGTTCAAGGATTATGATAAGGAGAAAGTGCATCAATGGAGACAAGCTCTGCATCAAGTAGCTAACTTATCTGGCCAGCATTTCAAACTCGGGAATGAATACGAATATGATTTTATACAGAAGGTTGCTAGAGATATATGCAACAAGATTAATCGTGTTCCTTTATATGTTGCAAATTACCCCGTCGGACTGAAGTCTCGAGTTTTGGAAGTAAACAAGCTTCTAAATGATGGACCTAATGATGGAGTTCATATGGCTGGGATTTATGGAATTGGTGGAATAGGTAAAACAACACTTGCTCGAGCTGTTTACAATTTGATTTCTGATCAATTTGAAGGTTTATGTTTTCTTGAAAACGTGAGAGAAAATGCAAATAAATATGGACTAGAGCATCTCCAAGAGATGCTTCTTTGTAAAATACTTGGAGAGAAGGATATCAAGTTGGCAAGTGCTAGTGAAGGAATTTCAGTAATAAAGCACAGGCTTTGTCGAAAGAGGGTTCTTTTAATTCTTGATGATGTAAACAAACAACAACAGTTGCAAAAACTTGTTGGAGGGCTTGATTGGTTTGGTTCCGGTAGCAGAGTTCTAATTACAACTCGAGACAAACACTTACTAGCATGTCATGGGGTTGAAAGAACATATGAATTAAATGGGTTAAGTTGGGAAGACTCCATCAATCTGTTTAAGTGGAATGCTTTTAAAAGCAACCAAGTTGATCCAGGTTTCAAGCACATTATAAATGATGCAGTAACTTACTCTGCTCGTCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACCTATATGGGAAAACAATTGAAGAATGGAAATCTGCATTAAACCGGTACAAAAGGATTCCTGAAAGAGATATACTTGAAATACTTAAAACAAGCTATGATGCTTTGGAGGAAGATGCACAAAATGTCTTTCTTGACATTGCTTGTTGTTTTAAAGGATTTCATTTGACAGAGGTCACAGATATACTACGTGCTCATCATGGTATTTGCCCAAAACATGCTATTGGAGTTTTGGTCGATAGAAATCTCATGAAGGTTAATCAAAACGGCAAAGTGACGATACATGACTTGATAGAGGAAATGGGCAAAGAAATTGTTCGCCAAGAAGGAAAGCCTGGACAACGTAGCCGATTATGGTTCCCTAAAGATGTAGTTCATGTTTTAGAAGATAATGAGGGAACTCACAAAATTGGAATAATATATCTGGATCTTAGCAATTCAAAGGAGAAAGTAGTGGATTGGGATGGAAAGGCCTTCAAAGATATGAAAAGCCTCAAAACACTAATTATTCGAAATGCTTGTTTTTCTCAAGGTCCCAGATACCTTCCAAACAGTTTGAGAGTGCTAGAATGGTGGGGATATCCATCAGATACTTTTCCAATTGATTTTCGTCCAAAGAAACTTGTCATGTGCAAGTTACCCACCAGTCATTTGTTGTCATTCAATTTGTTGGAGAAGCAGAAGGAGTTTGTGAACTTGAGGGATTTGATTTTTGATGGTGCTGAACATCTAACAAGTATACCTAACCTATCATGTGCCCCAAATTTAAAAAAATTATCATTTGCAAAATGTGAGAATTTAATAGAGATTGATGAATCAGTTGGATTTCTGGGTAAACTCAAAATATTGGATGCTGAAGGTTGTAGTACGCTTAGGAAGTTTCCTCCCCTTATGCTAACCTCCCTTGAAGAACTGTATCTTTCACACTGCTCAAGCCTTCAGAGCTTTCCAGAAATATTAGGAAAGATGGAAAATGTTACATGGCTCTCATTCCAAAATACTGCCATAAAGGAATTACCATTTTCAATTGGAAATCTTACCCGACTTCAGGGTTTAGATTTGGATAAAAATGGAATAGTTCAGTTTCCAAGTAGCATTACCCAGTTGCCAGAACTTATACATGTGTCCATTCGTGGATCATTATATAGCCAGAATGAAGAAGGTGAAGTAGAACGGAGAAGAATGCGGTCTCTAAACAAAAGTGTCGAATCACATTGTAACATGTCTGATGAAATCTTTCCAACAGTCTTTGCCTGGTTTACCATTGATGTAGAAGAGTTAGAGTTGTCACGTCTTGATTTCACAGTTCTCCCTGCATGTATCACAGAGTGTCTCCGTTTGAAGAAACTTAAGCTGGATCAATGCTATAATCTTCGCGAAATTAAAGGGCTTCCACCTAACTTGGAAACACTCTGTGCAACAGCCTGTAGATCCTTGCAAGCTTTAGACCTCACAATTCCTCTAGCAGCCACCAAAGAATATCACTCTTTGAGGAGACTCATCTTAGACAATTGCAAGAATCTTCAAGTTATCAAAGGGATTCCACCCAACATTGAAGTGTTGTCTGCCAGAAATTGCACATCCTTGACATACTCATGCAGAAACATGCTATTAAATCAGGAATTACATGAGGAGGGTGGAAGCAGGTGGCTTTTAATGCCGGGAAGTAGAATTCCAGAATGGTTCCAACACCAAAGCAGTGGATGGAAAATCTCTTTTTGGTTTCGAAACATGTTGTTTCCTGCCATATCACTGTGTTTTGTCTGCAATACCAAATTCTACTTTTGCGCCGTGTTGAAGATCAATGACACTGCAGTGCATAAGTGGCAACTAACCAACAAAGGGTGCTGGTCTGCGCCTGTGCCAGAAGTAGAAGTAGAAGCGGATCATATATTTATTCTTGATGATAAACACATGAAATCCAATGACATGAATCAAGTGCTATTGCAAAGTAACGAATGGAATCATGCAGAGGTTTCCATTGTTAAATATCCTGAAGGGAGACAAACACTAATTGATATGCAAACCGGAATCAGCATATTCAAAGAAAAAGGTAGCGTGGATGATATCCGATTCACTGATCCTTACAATAAAAGGATACATGATCATGTGTATTGGGATTGGAGTTCAATGGCATCAGCACAGACAAGTAGCACTAGCAATGTCAAAGGAAATACTTTGTTTCTTCAAAATCTCATTTCGGGGAGTAGAAATAATTACTCTTGA 3429 0.3908 MALHASLSSSSFNYGWTFDVFLSFRGIDARHGFTGNLYNILHAKGIQTFFDDDKLPRGTQITPFLSSAIENSRIAIVVLSQNYAASSFCLDELTTILECVKGNGRLVLPIFYDVDPSDVRHQRGSYGEALARFEERFKDYDKEKVHQWRQALHQVANLSGQHFKLGNEYEYDFIQKVARDICNKINRVPLYVANYPVGLKSRVLEVNKLLNDGPNDGVHMAGIYGIGGIGKTTLARAVYNLISDQFEGLCFLENVRENANKYGLEHLQEMLLCKILGEKDIKLASASEGISVIKHRLCRKRVLLILDDVNKQQQLQKLVGGLDWFGSGSRVLITTRDKHLLACHGVERTYELNGLSWEDSINLFKWNAFKSNQVDPGFKHIINDAVTYSARLPLALEVIGSNLYGKTIEEWKSALNRYKRIPERDILEILKTSYDALEEDAQNVFLDIACCFKGFHLTEVTDILRAHHGICPKHAIGVLVDRNLMKVNQNGKVTIHDLIEEMGKEIVRQEGKPGQRSRLWFPKDVVHVLEDNEGTHKIGIIYLDLSNSKEKVVDWDGKAFKDMKSLKTLIIRNACFSQGPRYLPNSLRVLEWWGYPSDTFPIDFRPKKLVMCKLPTSHLLSFNLLEKQKEFVNLRDLIFDGAEHLTSIPNLSCAPNLKKLSFAKCENLIEIDESVGFLGKLKILDAEGCSTLRKFPPLMLTSLEELYLSHCSSLQSFPEILGKMENVTWLSFQNTAIKELPFSIGNLTRLQGLDLDKNGIVQFPSSITQLPELIHVSIRGSLYSQNEEGEVERRRMRSLNKSVESHCNMSDEIFPTVFAWFTIDVEELELSRLDFTVLPACITECLRLKKLKLDQCYNLREIKGLPPNLETLCATACRSLQALDLTIPLAATKEYHSLRRLILDNCKNLQVIKGIPPNIEVLSARNCTSLTYSCRNMLLNQELHEEGGSRWLLMPGSRIPEWFQHQSSGWKISFWFRNMLFPAISLCFVCNTKFYFCAVLKINDTAVHKWQLTNKGCWSAPVPEVEVEADHIFILDDKHMKSNDMNQVLLQSNEWNHAEVSIVKYPEGRQTLIDMQTGISIFKEKGSVDDIRFTDPYNKRIHDHVYWDWSSMASAQTSSTSNVKGNTLFLQNLISGSRNNYS 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00031 1142 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 187 - -
Stsc30266g00031 1142 PRINTS Disease resistance protein signature 296 310 - -
Stsc30266g00031 1142 PRINTS Disease resistance protein signature 389 403 - -
Stsc30266g00031 1142 PRINTS Disease resistance protein signature 698 714 - -
Stsc30266g00031 1142 PRINTS Disease resistance protein signature 220 235 - -
Stsc30266g00031 1142 Gene3D - 14 181 IPR035897 -
Stsc30266g00031 1142 Gene3D Ribonuclease Inhibitor 717 944 IPR032675 -
Stsc30266g00031 1142 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Stsc30266g00031 1142 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Stsc30266g00031 1142 Gene3D - 354 438 IPR042197 -
Stsc30266g00031 1142 Pfam TIR domain 18 186 IPR000157 GO:0007165
Stsc30266g00031 1142 SMART till_3 17 158 IPR000157 GO:0007165
Stsc30266g00031 1142 SUPERFAMILY L domain-like 542 936 - -
Stsc30266g00031 1142 Gene3D Ribonuclease Inhibitor 529 716 IPR032675 -
Stsc30266g00031 1142 Gene3D - 182 347 IPR027417 -
Stsc30266g00031 1142 Pfam NB-ARC domain 206 435 IPR002182 GO:0043531
Stsc30266g00031 1142 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 927 IPR044974 GO:0006952
Stsc30266g00031 1142 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Stsc30266g00031 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00031 Stsc-Chr30266 142881 148570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00031 12 924 WRKY Transcription Factor Family AT4G12020 28.797 1.99e-77 279