Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00030 ATGGAACAAAAATCGTGCGAGGAATCTGCGAGAAGCGTTTCGGACTTGAAGTGTGCGAAGAATCTCAACGAATCCGATGAATCAATTGCGTGCCCTACACCGAATAAGACGAATGAGTTACCTTCCAAATCCAAGGAGCAACAAACTCAGCTTCCAGAAAAATATAGAGCCTTAGCTGATTTGTTTGGTCATATGAGCTGCTCACTTAGATTGCTGCACCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCGCTCAAGTGGAAATTCTTGCACAGAGGAATTTTTCATATGCCCATCTTGCACAAATGAAGTATATACTTCCTGAGGGCATACATATAGATAAGGTCCTTGTTTATGATAAGAAGAGCTTGTGTATGAAGGCAGATATGAAGATCACCTTGGTATTTGATGTTTTGGAAGAGGAATCTAATGAATCTGCTGATATGGCTCTTCGACAATATTTTAGTTCTAGGCTTATTAGCTTTTCCAATATGCATCCCGAGGCTGCTGATATTCCAGAGGCTGTTCTGCCAGAGCCCTTTTGCCGAAGACCATGTAGCTTGATTGATGTGGATTTGCCTGTAAATTCTGCCAAAGCTTCTTTGTCAACTTCCAATCAAATTGAATTGTTACCTGGGAAGTTCCATCCATTTCCATCTTTTACCCGACATTTTTCTCAGAAGAATGTTGCTAGCCAGACTGAAAAGCTCCAGTTTATTTCATCAACTACTTCCCTGTCATCCTGTGTGTCTAATTACTTGGATAACCAAGAAAGTGAAAGCAAATGCCAGGAAGTATATGCACCACCATCCGATTGTGCAACTAATATGAATAGTGGAGGACAGGGGAAGGAATCTATTTCTCACTTTCAACCTAATATTGCTAATACACCAGTGCATACTGTCTGTTCTCCACATGATGTTTGTGATAGTAGTTCTGAGAGCCCTGATATCAAAATTTCCTCTTCCTCAAATAGTTTGATGACAAAGACACCTGCACAATCAGCACCTGGGAGATTGATTCCCATTTCTGATGCCAAGCTTCAGAATATGGATACCAGAAAGTCAGCATCATGTCGCAAACCAGCAAAAAGAGTGCTTGACTTTCCGTTCATGGAAGGAAATGCTGGTATTGACATCAAAGTAGACAACTTAGAACCTATCAGAGGTTCACACCAATATGATAGCATCCTTGAATCTGGTATTGGATGTGCTGAGGATTGGAATGTACTGACCCGGAAGGTAGAAGAGAGGTCGGGTCACTCTCAGGAGAATACCAACCAAATTCACAGTGGTTTAGATACAAGGGATGAAAAATCATCTTCGTTGCTTGATCTGGTCGATGTGATTCACTCTATATTTCATTCTGTCAGAGGAGCTTCAATCACAAAAGAGGAGCTTTTGCATAAGATACTTATGAACAGTTTGGATGTTGATGAGATTAGCGAAGTTGAAGAACAAATCCATTTTATTGAAAAGTTGATGCCAGACTGGATCTGCAGAAAGTTGCTTCCTAGTGGAGATGATATCTATAGCATCAAGAAAGTGTCAGACTTGGACTCAGTTCGATCTAGGCTTCTTACCCACGTGACTCAGAGCTGA 1605 0.4081 MEQKSCEESARSVSDLKCAKNLNESDESIACPTPNKTNELPSKSKEQQTQLPEKYRALADLFGHMSCSLRLLHLRKKSPTFQNICAQVEILAQRNFSYAHLAQMKYILPEGIHIDKVLVYDKKSLCMKADMKITLVFDVLEEESNESADMALRQYFSSRLISFSNMHPEAADIPEAVLPEPFCRRPCSLIDVDLPVNSAKASLSTSNQIELLPGKFHPFPSFTRHFSQKNVASQTEKLQFISSTTSLSSCVSNYLDNQESESKCQEVYAPPSDCATNMNSGGQGKESISHFQPNIANTPVHTVCSPHDVCDSSSESPDIKISSSSNSLMTKTPAQSAPGRLIPISDAKLQNMDTRKSASCRKPAKRVLDFPFMEGNAGIDIKVDNLEPIRGSHQYDSILESGIGCAEDWNVLTRKVEERSGHSQENTNQIHSGLDTRDEKSSSLLDLVDVIHSIFHSVRGASITKEELLHKILMNSLDVDEISEVEEQIHFIEKLMPDWICRKLLPSGDDIYSIKKVSDLDSVRSRLLTHVTQS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00030 534 MobiDBLite consensus disorder prediction 315 334 - -
Stsc30266g00030 534 MobiDBLite consensus disorder prediction 26 49 - -
Stsc30266g00030 534 Pfam DNA replication factor CDT1 like 51 121 IPR014939 -
Stsc30266g00030 534 Gene3D - 432 534 IPR038090 -
Stsc30266g00030 534 PANTHER DNA REPLICATION FACTOR CDT1 13 528 IPR045173 GO:0003677|GO:0030174|GO:0071163
Stsc30266g00030 534 SMART CDT1_2 51 180 IPR014939 -
Stsc30266g00030 534 MobiDBLite consensus disorder prediction 26 48 - -
Stsc30266g00030 534 CDD Cdt1_m 42 203 IPR014939 -
Stsc30266g00030 534 SUPERFAMILY "Winged helix" DNA-binding domain 43 182 IPR036390 -
Stsc30266g00030 534 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00030 Stsc-Chr30266 123520 127252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00030 47 527 Core DNA Replication Machinery Family AT2G31270 29.273 3.00e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00030 K10727 - gmx:102670055 555.829