Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00029 ATGGAACAAAAATCGTGCGAGGAATCTGCGAGAAGCGTTTCGGACTTGAAGTGTGCGAAGAATCTCAACGAATCCGATGAATCAATTGCGTGCCCTACACCGAATAAGACGAATGAGTTACCTTCCAAATCCAAGGAGCAACAAACTCAGCTTCCAGAAAAGAATTTTTCATATGCCCATCTTGCACAAATGAAGTATATACTTCCTGAGGGCATACATATAGATAAGGTCCTTGTTTATGATAAGAAGAGCTTGTGTATGAAGGCAGATATGAAGATCACCTTGGTATTTGATGTTTTGGAAGAGGAATCTAATGAATCTGCTGATATGGCTCTTCGACAATATTTTAGTTCTAGGCTTATTAGCTTTTCCAATATGCATCCCGAGGCTGCTGATATTCCAGAGGCTGTTCTGCCAGAGCCCTTTTGCCGAAGACCATGTAGCTTGATTGATGTGGATTTGCCTGTAAATTCTGCCAAAGCTTCTTTGTCAACTTCCAATCAAATTGAATTGTTACCTGGGAAGTTCCATCCATTTCCATCTTTTACCCGACATTTTTCTCAGAAGAATGTTGCTAGCCAGACTGAAAAGCTCCAGTTTATTTCATCAACTACTTCCCTGTCATCCTGTGTGTCTAATTACTTGGATAACCAAGAAAGTGAAAGCAAATGCCAGGAAGTATATGCACCACCATCCGATTGTGCAACTAATATGAATAGTGGAGGACAGGGGAAGGAATCTATTTCTCACTTTCAACCTAATATTGCTAATACACCAGTGCATACTGTCTGTTCTCCACATGATGTTTGTGATAGTAGTTCTGAGAGCCCTGATATCAAAATTTCCTCTTCCTCAAATAGTTTGATGACAAAGACACCTGCACAATCAGCACCTGGGAGATTGATTCCCATTTCTGATGCCAAGCTTCAGAATATGGATACCAGAAAGTCAGCATCATGTCGCAAACCAGCAAAAAGAGTGCTTGACTTTCCGTTCATGGAAGGAAATGCTGGTATTGACATCAAAGTAGACAACTTAGAACCTATCAGAGGTTCACACCAATATGATAGCATCCTTGAATCTGGTATTGGATGTGCTGAGGATTGGAATGTACTGACCCGGAAGGTAGAAGAGAGGTCGGGTCACTCTCAGGAGAATACCAACCAAATTCACAGTGGTTTAGATACAAGGGATGAAAAATCATCTTCGTTGCTTGATCTGGTCGATGTGATTCACTCTATATTTCATTCTGTCAGAGGAGCTTCAATCACAAAAGAGGAGCTTTTGCATAAGATACTTATGAACAGTTTGGATGTTGATGAGATTAGCGAAGTTGAAGAACAAATCCATTTTATTGAAAAGTTGGTGCCAGACTGGATCTGCAGAAAGTTGCTTCCTAGTGGAGATGATATCTACAGCATCAAGAAAGTGTCAGACTTGGACTCAGTTCGGTCCAGGCTTCTTACCCACGTGACTCGGAGCTGA 1485 0.4121 MEQKSCEESARSVSDLKCAKNLNESDESIACPTPNKTNELPSKSKEQQTQLPEKNFSYAHLAQMKYILPEGIHIDKVLVYDKKSLCMKADMKITLVFDVLEEESNESADMALRQYFSSRLISFSNMHPEAADIPEAVLPEPFCRRPCSLIDVDLPVNSAKASLSTSNQIELLPGKFHPFPSFTRHFSQKNVASQTEKLQFISSTTSLSSCVSNYLDNQESESKCQEVYAPPSDCATNMNSGGQGKESISHFQPNIANTPVHTVCSPHDVCDSSSESPDIKISSSSNSLMTKTPAQSAPGRLIPISDAKLQNMDTRKSASCRKPAKRVLDFPFMEGNAGIDIKVDNLEPIRGSHQYDSILESGIGCAEDWNVLTRKVEERSGHSQENTNQIHSGLDTRDEKSSSLLDLVDVIHSIFHSVRGASITKEELLHKILMNSLDVDEISEVEEQIHFIEKLVPDWICRKLLPSGDDIYSIKKVSDLDSVRSRLLTHVTRS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00029 494 Gene3D - 392 493 IPR038090 -
Stsc30266g00029 494 PANTHER DNA REPLICATION FACTOR CDT1 52 488 IPR045173 GO:0003677|GO:0030174|GO:0071163
Stsc30266g00029 494 MobiDBLite consensus disorder prediction 26 49 - -
Stsc30266g00029 494 MobiDBLite consensus disorder prediction 275 299 - -
Stsc30266g00029 494 Pfam DNA replication factor Cdt1 C-terminal domain 385 460 IPR032054 -
Stsc30266g00029 494 SMART CDT1_2 20 140 IPR014939 -
Stsc30266g00029 494 SUPERFAMILY "Winged helix" DNA-binding domain 49 142 IPR036390 -
Stsc30266g00029 494 MobiDBLite consensus disorder prediction 275 294 - -
Stsc30266g00029 494 FunFam CDT1-like protein a chloroplastic 393 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00029 Stsc-Chr30266 123520 139599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00029 46 487 Core DNA Replication Machinery Family AT2G31270 29.362 4.69e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00029 K10727 - gmx:102670055 473.781