Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00027 ATGGCTGATTGGACCTATGATGTGTTCTTGAGTTTCAGAGGCAAAGATATTCGGCAACAGTTCATTGGCCATCTCTACAATGCTCTTTGCCGCAGGGGAATCCACACCTTCATTGATGACGTGGAGATCGAGCGAGGAGAAGACATCACACGCTCGCTTCTCACTGCAGTTGAAGAGTCCATGATTGCCATCCCCGTGTTCTCAGAAAACTACGCAAGTTCAAGTTTCTGCTTGGATGAACTGGTTAACATCATGGAGTGTGCTAAGACTAAGGGCCAGATTGTGTTGCCAGTTTTCTATGACGTGGATCCTTCAGATGTGAGAAATCTGAGAGGGAGTTTTGGTGAAGCAATGAAGAAACATGAGGAGAGGATGATAGTGAAGGAAGATAAGGAAAGGTTCAAGAAATGGAAGATGGCTATTAAGCAAGCAGCTAATCTATCTGGATTTCATTTTAAACTTGGGACTGAATCTGAATGTGAGTTTACTGAGAAGATCGTCAAGATAGTCTCCAAATGGGTTCATCACACATGTTTATATGTTTCAGATCAAGTAATTGGACTAGAATCTCATATTCGAGAACTGAACTTACTTTTGGAAGTTGAATCCAATGACAGAGTCTACATGGTAGGGATTCATGGCATTGGTGGAATAGGTAAAACAACTCTTGCCCGTGCTGTCTACAATTCAATTGCTGACTCATTTGAAGGTGTTTGTTTTCTTGGTAATGTGAGAGAAAATTCAACAACACATGGACTAGTTTCCCTCCAACAAATGTTGCTTTCAAAGTTAGTTGGTGAGGGAGATGTTAAGTTTGGTGATGTCAGTGAAGGAAAGAAGGTAATAGAGCGTCGGCTCAACCGAAAGAAAGTTCTGTTGATTGTTGATGATGTTGATAGATTAGAGCAGTTAAAAGCAGTTGCAGGGGATTCGGTTTGGTTTGGTTCTGGTAGTAGAATCATCGTCACGACTCGAAACAAAGGCTTGTTAAAGAGTCATGGAATTGTAAGAACATATGAAGTAGGGAAGTTAAATGATAAAGAAGCACTTGATTTGCTTAGATGGAATGTTTTTAAAACAAGGGAGGTTGATCCAAGCTACTCATACATTTTGAATAGAACAGTTGCTTTTGCTTCTGGCTTGCCACTTGCATTGGAAGTAATAGGTGCTAACTTGTTTGGTAAGGGTAAAGATGAGTGGGAATCTGCTTTGGATCAGTATAAAAGAAGTCCTAAGAGAGAGATTCAAGAGATTCTTAAAGTGAGCTTTGATGGATTGGAGGAGGAAGAGAAGAAGATCTTTCTTGACATTGCTTGTTTCTTTAATGGATATAGATCTAGATATGTTGAGGAGATACTCCGTGCGCATCACGGGTTTTGCCCGAAGAACAGCATCCATGTGTTGATTGATAAGTCTTTGGTGAAGATTGAAGATGATAAGGTGATGTTACATGATTTGATTCAAGATATGGGTAGAGAAATTGTTCGACAAGAATCGATAGAGCCTCAAGAGCGTAGCAGGATTTGGAACTTTGAGGATGCAAAACGCGTTTTGGAACAAGACATTGGTAGCCATAAAATTGAAATTATCAAGCTAGCATTCCCCAAAGATGATGAAAAGAAGTTCATGAATTTGAGAGTTTTGAATGTTAGCAATTGCCAATTCTTAGAAGAAATACCTGATTTATCTGTTGCCCCGCATTTAGAAGAATTATCATTCTGTTGGTGTCAGAACTTAATTGAAGTTCATAAATCAGTTGGTTTCCTAACTAAACTTAGAGTGTTGGATGCCAAGTGTTGTGGCAAGCTTAGCAGTTTTCCAGACCTTATGCTACCTGCTCTCGAAAAACTCCGCCTTTCTTCTTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAGTTTAACAAAACTCGAGTTAGAATACACTCCGATCAAAAAATTCCCGCCTTCAATTTTTTATGTTACTAGACTTGAAAGATTAGAATTGTGGAACTCTAAGATTGTTCTGTTGCCAAGTAGCATTTTTCTGATGAAAGAGCTTAAGTGCTTGAAAATTAGAAATTGTGAAGGTTTGCAGTTAGATGCACAAGAGAAAGTTGAAGAAGAGAAAATAAACTCAATTGTGTTTTCAAATCAGCAACAGTTTGATTTCAGAAAGTGTAATCTATCAAATGAGTTTCTTCAAAGTTGTGTTCCTTGGCTTGTCAATGTAAAAGAGTTGAATCTATCTTCCAACAGTTTCACAAGTCTTCCTGCATGCATTGAAGGATGTACCTTCTTGAAGGTACTTATTTTGGATTATTGTGGAAATCTTCAAGAAGTTAGAGGGATTCCACCAAACATTGAAAAATTCTCTGCAAGAAAATGCACATCCTTAAAAAGTTTGGACCTCATGCTCCTTTCATGCACCAAAGATTGTAACTTTCTGAAGGAACTCATTTTGGATGGTTGTGAGAATCTTGAGGAAATAAGGGGGATTCCACCTAGCATAGAAGTTTTGCATGCTCCAAGCTCCACATTGTTGTGTTCCTCTTCTAGGAGCATGTTTTCCAACCAGGATTTACATGAGGATGTAAATGACAAGGAATCTTGGCTGCCAATGCCAGGAACAAAGGTTCAGGAGTGGTTCAACCATTTTCGCCACGGATCATCAATTTCTTTTTGGTTTCGGAACAAGTTTCCTGCCATATCTCTCTTTGTGATTAATGAACTGAGAAAGACTTCATTTGAACCCAAATTGACCATCAATGGCCATGAAGTCCATCTTTTCTCCTTATTCTCTCTACAAGAAGATCACATACTGATTCTGAATCTAGGTTCAAAGCAAACTGAATTCAAAGATGAGATAAACAATGTGATTTCTAAAGATGAATGGAATCATGTGGAGTTGTTTTCTGATCATGAACTGCATGGAGTAGATGGAACCATATGTGATGGCATCATGCAAATTGGACTCCATGTGTTCAAACAATTTAGTAGCATGGAAGATATAAGATTCACTGAACCCTTCTTGTTGGAAGAAGTTCATAGCTTGGAGGGTATTGGATATTCTGCTACACAAATGGTGCAAGGGCATCAAAATGATCATGATGAACCTTTGATGAATCAAGCTCTTCTAACTCAAGATGATCTTGATCTGGAGATGGAAGCATTTTATGCTTCTCTTGATGCTGATACACATGGTGTTCTTTCAGCGAATTCGGATGATGATCCAGTAACCATTACTGCTCCAAGTAGAGAGACCAAGGAAGCATTGAAAACAATACATGACTTCATCACAAACAATGATGCTTCAGTGTTGTTGCATGAAGAAAACTACAATGTCATGAAGAACAGTTTGCATTACCTATCCAATTTATCTTCAAAAGATGGCATATCAGGAGAAGTTGAAACTTTGGTATTAGAAGCTTCATGGTTCTTCAATTGTTGCAGTGTGAAATACATTGAATCATGCAGGGAAATTGAGTCTACAACATCAGAGCTACAAAGATTTGATGAATTAAAAGCAGGATTGGAAGGTAACAGTAACAAGCACAAGGAGTTGAAGCAAAAGTTAGATTGGATGGAGAAAAGAAAGAAGGAGCTGGAAGAGGAAATGAATGCCATCAAAGCTAAGTTATGTGATTGTGAATCAGAAAAGAAGATTGTTGTTCAAAAAAAGAGAGATATATTTGAAGAAGCAAAGACACTTAAAGCTCAAAGAGATGAGTGGAGGGAAAAAGTGCCACAACTGCAGCATCAACAGAGTTTAGCAAAGACTAATCATGCAAAATTCACAGCTGAATGGTCAAAACTAGGAGAAAAATTTAACACCATTGTTCTAGACTGA 3840 0.3826 MADWTYDVFLSFRGKDIRQQFIGHLYNALCRRGIHTFIDDVEIERGEDITRSLLTAVEESMIAIPVFSENYASSSFCLDELVNIMECAKTKGQIVLPVFYDVDPSDVRNLRGSFGEAMKKHEERMIVKEDKERFKKWKMAIKQAANLSGFHFKLGTESECEFTEKIVKIVSKWVHHTCLYVSDQVIGLESHIRELNLLLEVESNDRVYMVGIHGIGGIGKTTLARAVYNSIADSFEGVCFLGNVRENSTTHGLVSLQQMLLSKLVGEGDVKFGDVSEGKKVIERRLNRKKVLLIVDDVDRLEQLKAVAGDSVWFGSGSRIIVTTRNKGLLKSHGIVRTYEVGKLNDKEALDLLRWNVFKTREVDPSYSYILNRTVAFASGLPLALEVIGANLFGKGKDEWESALDQYKRSPKREIQEILKVSFDGLEEEEKKIFLDIACFFNGYRSRYVEEILRAHHGFCPKNSIHVLIDKSLVKIEDDKVMLHDLIQDMGREIVRQESIEPQERSRIWNFEDAKRVLEQDIGSHKIEIIKLAFPKDDEKKFMNLRVLNVSNCQFLEEIPDLSVAPHLEELSFCWCQNLIEVHKSVGFLTKLRVLDAKCCGKLSSFPDLMLPALEKLRLSSCSSLENFPEILGKMESLTKLELEYTPIKKFPPSIFYVTRLERLELWNSKIVLLPSSIFLMKELKCLKIRNCEGLQLDAQEKVEEEKINSIVFSNQQQFDFRKCNLSNEFLQSCVPWLVNVKELNLSSNSFTSLPACIEGCTFLKVLILDYCGNLQEVRGIPPNIEKFSARKCTSLKSLDLMLLSCTKDCNFLKELILDGCENLEEIRGIPPSIEVLHAPSSTLLCSSSRSMFSNQDLHEDVNDKESWLPMPGTKVQEWFNHFRHGSSISFWFRNKFPAISLFVINELRKTSFEPKLTINGHEVHLFSLFSLQEDHILILNLGSKQTEFKDEINNVISKDEWNHVELFSDHELHGVDGTICDGIMQIGLHVFKQFSSMEDIRFTEPFLLEEVHSLEGIGYSATQMVQGHQNDHDEPLMNQALLTQDDLDLEMEAFYASLDADTHGVLSANSDDDPVTITAPSRETKEALKTIHDFITNNDASVLLHEENYNVMKNSLHYLSNLSSKDGISGEVETLVLEASWFFNCCSVKYIESCREIESTTSELQRFDELKAGLEGNSNKHKELKQKLDWMEKRKKELEEEMNAIKAKLCDCESEKKIVVQKKRDIFEEAKTLKAQRDEWREKVPQLQHQQSLAKTNHAKFTAEWSKLGEKFNTIVLD 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00027 1279 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 700 IPR044974 GO:0006952
Stsc30266g00027 1279 SMART LRR_typ_2 738 761 IPR003591 -
Stsc30266g00027 1279 SMART LRR_typ_2 658 681 IPR003591 -
Stsc30266g00027 1279 SMART AAA_5 206 354 IPR003593 GO:0016887
Stsc30266g00027 1279 Gene3D - 174 336 IPR027417 -
Stsc30266g00027 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 437 IPR027417 -
Stsc30266g00027 1279 Pfam TIR domain 6 177 IPR000157 GO:0007165
Stsc30266g00027 1279 Coils Coil 1278 1279 - -
Stsc30266g00027 1279 SUPERFAMILY "Winged helix" DNA-binding domain 414 518 IPR036390 -
Stsc30266g00027 1279 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Stsc30266g00027 1279 Gene3D Ribonuclease Inhibitor 628 844 IPR032675 -
Stsc30266g00027 1279 FunFam Disease resistance protein (TIR-NBS-LRR class) 2 176 - -
Stsc30266g00027 1279 Coils Coil 1224 1251 - -
Stsc30266g00027 1279 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Stsc30266g00027 1279 SMART till_3 5 147 IPR000157 GO:0007165
Stsc30266g00027 1279 SUPERFAMILY L domain-like 526 848 - -
Stsc30266g00027 1279 Coils Coil 1175 1209 - -
Stsc30266g00027 1279 Gene3D - 343 427 IPR042197 -
Stsc30266g00027 1279 Gene3D Ribonuclease Inhibitor 535 627 IPR032675 -
Stsc30266g00027 1279 PRINTS Disease resistance protein signature 209 224 - -
Stsc30266g00027 1279 PRINTS Disease resistance protein signature 285 299 - -
Stsc30266g00027 1279 PRINTS Disease resistance protein signature 609 625 - -
Stsc30266g00027 1279 PRINTS Disease resistance protein signature 378 392 - -
Stsc30266g00027 1279 Gene3D - 2 173 IPR035897 -
Stsc30266g00027 1279 ProSiteProfiles TIR domain profile. 4 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00027 Stsc-Chr30266 106814 111728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00027 6 696 WRKY Transcription Factor Family AT4G12020 28.354 1.97e-56 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00027 - - adu:110281223 1679.46