Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00024 ATGGCATCATCATCATCAAACCCTCAAGTGATAACCTGCAAAGCTGCAGTGGCATGGGGAGCAGGAGAGGCATTGGTGATGGAGGAAGTTCAAGTCAGCCCTCCCCATTCAATGGAGATTCGTATCAAAGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTTGCAGCCTGGGAATCTCATGCTATATTTCCTCGTATATTTGGTCATGAAGCATCAGGGATTGTTGAAAGTGTGGGGGAGGGAGTGACTGAATTCAAGGAGGGGGACCATGTGCTGACAGTCTTCATCGGAGAATGCAAGGCGTGCAGGCCGTGCACATCCGGGAAAAGCAACATCTGTCAAGTTTTGGGATTGGAGAGAAAAGGTTTAATGCATAGTGATCAGAAGACGCGCTTCTCTGTCAAAGGGAAGCCTGTATATCATTATTGTGCTGTTTCGAGTTTCAGCGAGTACACGGTAGTCCATTCCGGATGTGCAGTGAAAGTTAGCCCGGATGTACCTCTTGAGAAAGTGTGCCTTCTGAGCTGTGGAGTTGCTGCAGGTCTAGGTGCAGCATGGAATGTTGCTAATGTCACAAAAGGATCAACAGTGGTGATATTTGGTCTCGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCAAAATTGAGGGGCGCATCTCAAATAATTGGCGTGGACAACAATCCACAGAAGTGTGAAAAAGCAAAAGCTTTTGGATTTACAGAAGTCGTTGACCCAAGCTCCTACCAAGAACCTATTGCTCAGGTTATTAAGCGCATTACTGACGGGGGAGCAGATTTTACTTTTGAATGTGTAGGCAACACTGACATGATAACCACTGCATTGCAGTCCTGTTGTGATGGATGGGGTTTGACAGTAACACTTGGTGTGCCTAAGGTGAAGCCTGAGATGTCAGCTCACTATGGACTATTCTTAATGGGAAGAACACTCAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTTATTAGTAGAGAAGTATGTGAACAAGGAAATTCAAATTGATGACTACATAACACACAATTTGCCATTTGATGACACTAACAAAGCTTTTGATCTCATGAAGGAAGGGAAGTGTCTGCGTTGTGTTATTCACATGCCAAGATAA 1137 0.4503 MASSSSNPQVITCKAAVAWGAGEALVMEEVQVSPPHSMEIRIKVVSTSLCRSDLAAWESHAIFPRIFGHEASGIVESVGEGVTEFKEGDHVLTVFIGECKACRPCTSGKSNICQVLGLERKGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPDVPLEKVCLLSCGVAAGLGAAWNVANVTKGSTVVIFGLGTVGLSVAQGAKLRGASQIIGVDNNPQKCEKAKAFGFTEVVDPSSYQEPIAQVIKRITDGGADFTFECVGNTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLFLMGRTLKGSLFGGWKPKSDLPLLVEKYVNKEIQIDDYITHNLPFDDTNKAFDLMKEGKCLRCVIHMPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00024 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc30266g00024 378 Gene3D - 16 371 - -
Stsc30266g00024 378 FunFam Alcohol dehydrogenase 6 16 194 - -
Stsc30266g00024 378 PANTHER ALCOHOL DEHYDROGENASE 9 374 - -
Stsc30266g00024 378 CDD alcohol_DH_plants 11 375 - -
Stsc30266g00024 378 Gene3D - 181 319 - -
Stsc30266g00024 378 SUPERFAMILY GroES-like 7 186 IPR011032 -
Stsc30266g00024 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 340 IPR036291 -
Stsc30266g00024 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 181 319 - -
Stsc30266g00024 378 Pfam Alcohol dehydrogenase GroES-like domain 39 161 IPR013154 -
Stsc30266g00024 378 Pfam Zinc-binding dehydrogenase 205 325 IPR013149 -
Stsc30266g00024 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00024 Stsc-Chr30266 82072 84319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00024 16 113 Monolignol Biosynthesis Gene Families AT2G21890 34.862 8.47e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00024 K00001 - gmx:100819938 697.967