Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00022 ATGGAAATTGGTGAGAGGCCTGTCTTCAAAGATATTAGACGCTACTTCTGTCAATACTGTGGCATTTGCAGATCTAAAAGGGCCTTAATTACCTCACACATCAATTCTCAGCACAAGGATGAGTTGGAAAAAGCTAGAGCTGAAGGAAACAATGAAGCACAAGGTGAAAAAAAAAAACCCAACAACACTTGCCAACAATGTGGTGCTACTTTCAAAAAACATGCCTATTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTATGTACGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGAAGAACTTTTACATGTCCAGTGGAAAATTGCAACCTAAGTTTCTCAATAAAAGGTAGTATGACAAGACATGTTAAGGAGATTCATGATGAGGTTTCTACGTCCACAAATGTAGAGAGTAAGCAGTTTGCGTGCCCAGAAACTGGATGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGAAAGCATGAAGATTCTCATGTGAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGTATGAAACATTTCTCTAATACCCAGTGTCTTAAAGAACACATTGAATCCTGCCATCAATATGTAGCCTGTGACATTTGTGGAAGTAGGCAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACACAAAGCTGATAAATCGTTGGCGGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAGATTCTCAAGTAAATCTAATCTTGTTACACATAAGAAGGTCGTGCACTTTAAAGAAAAGCCTTTTGTGTGTTGCTTTCCTGATTGTGGCATGAGATTCGCTTACAAACACGTGAGAGATAAACACGAAAAAACTGGAAAACATGTTTATATCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAAAGAGTGTGTCCTACAGTTGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGGAGGAAAGGAATGACCTGATGAATTGA 1089 0.4022 MEIGERPVFKDIRRYFCQYCGICRSKRALITSHINSQHKDELEKARAEGNNEAQGEKKKPNNTCQQCGATFKKHAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGRTFTCPVENCNLSFSIKGSMTRHVKEIHDEVSTSTNVESKQFACPETGCGKVFKFASKLRKHEDSHVKLQSVDVVCLEPGCMKHFSNTQCLKEHIESCHQYVACDICGSRQLKKNIKRHLRTHKADKSLAEFKCEFKGCSCRFSSKSNLVTHKKVVHFKEKPFVCCFPDCGMRFAYKHVRDKHEKTGKHVYIHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMEERNDLMN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 281 305 IPR013087 -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Stsc30266g00022 362 MobiDBLite consensus disorder prediction 40 55 - -
Stsc30266g00022 362 Gene3D Classic Zinc Finger 90 114 - -
Stsc30266g00022 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 119 IPR013087 -
Stsc30266g00022 362 SUPERFAMILY beta-beta-alpha zinc fingers 117 182 IPR036236 -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 160 182 IPR013087 -
Stsc30266g00022 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 144 IPR013087 -
Stsc30266g00022 362 Coils Coil 39 59 - -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 92 114 IPR013087 -
Stsc30266g00022 362 Pfam Zinc finger, C2H2 type 158 182 IPR013087 -
Stsc30266g00022 362 Pfam Zinc finger, C2H2 type 63 84 IPR013087 -
Stsc30266g00022 362 Pfam Zinc finger, C2H2 type 248 273 IPR013087 -
Stsc30266g00022 362 Pfam Zinc finger, C2H2 type 90 114 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 90 114 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 248 273 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 190 215 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 218 239 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 15 38 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 62 84 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 119 144 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 158 182 IPR013087 -
Stsc30266g00022 362 SMART c2h2final6 279 305 IPR013087 -
Stsc30266g00022 362 SUPERFAMILY beta-beta-alpha zinc fingers 229 282 IPR036236 -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 192 215 IPR013087 -
Stsc30266g00022 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 278 IPR013087 -
Stsc30266g00022 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Stsc30266g00022 362 Gene3D Classic Zinc Finger 212 305 - -
Stsc30266g00022 362 Gene3D Classic Zinc Finger 115 154 - -
Stsc30266g00022 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 187 IPR013087 -
Stsc30266g00022 362 Gene3D Classic Zinc Finger 7 89 - -
Stsc30266g00022 362 SUPERFAMILY beta-beta-alpha zinc fingers 76 116 IPR036236 -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 121 144 IPR013087 -
Stsc30266g00022 362 MobiDBLite consensus disorder prediction 40 61 - -
Stsc30266g00022 362 ProSitePatterns Zinc finger C2H2 type domain signature. 250 273 IPR013087 -
Stsc30266g00022 362 Gene3D Classic Zinc Finger 155 182 - -
Stsc30266g00022 362 PANTHER ZINC FINGER PROTEIN 10 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00022 Stsc-Chr30266 77685 79660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00022 86 308 C2H2 Transcription Factor Family AT1G72050 50.362 7.90e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30266g00022 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00022 K09191 - gmx:100801812 565.459