Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00018 ATGATGAGTGATGCTGCAAACTCTCAGTCTCAGCTCTATGATCAAGAGCATGCAGTTCTTATGAGGATAAAACAGTACCTTCAAAACCCACCATTTTTAAGCCACTGGACACAGCAATCATCAATTTCCAATAATAACCACTGTTCTTGGCCTGAGATAAACTGCACCAGTAGTGGCAATTCTGTCACTTCACTCACTCTCTCCGACTCCAACATCACACAAGCCATACCAACCTTCCTTTGTGAACTCAAGAACCTCACTTCTCTTGACTTCAGCTTCAACTTCATCCCTGGTGAGTTCCCAACTTCACTGTACAATTGTTCAAAGCTTCAGTACCTTGATCTTTCAATGAACAACTTTGTTGGCAAGATTCCTGATGATATGGCCAGCTATTTATCTGAAATGAGGTACCTTAATCTTGGTTCTACCAATTTCACTGGTGATATTCCTTCTAGTATTGGAAGGTTAAAGGAACTGAGAGAGCTTAAGCTTCATTATTGTCTATTCAATGGAACAATTCCTGATGAGATTGGAAACTTGTCTAATCTTGAGTACTTGGATTTGTCTTACAACACCATGTTCCCGAGTTGGAAATTGCCATCAAACTTTACACAATTGACCAATTTGAAGGTCTTTCATGTGTATGCAACAAACTTGGTTGGTGAAATTCCAGAGAGCATTGGAGAAATGGTGGGTTTGGAGAATTTGGATATGTCACAGAATGGTTTAACTGGTGGAATTCCCAGTGGCTTGTTCTTGCTGAAGAATCTGACCATATTGTATCTTTTCCAGAACAGTCTCTCTGGAGAGATACCTAAAGTTGTTGAAGCATTGAATTTAGAAGATCTTGATCTTGCAGAGAATAACCTCACGGGGAAAATTCCAGAAGATCTTGGAAAGCTTAAGAATATTACTTGGTTGAATTTGTCACTTAATAAGTTGTCAGGGGAGATTCCAGACGCCTTCGGTAGTCTTCCGGCTATGGTGGATTTTCGCGTGTTTGACAACAATTTATCAGGTACTCTTCCATCTGAATTCGGCCGCTACTCGAAGCTCGAAACCTTTCAGGTTTCATCTAATAGTCTTAGTGGAAATTTACCAGAGAATTTATGCTACAATGGCATGCTACTTAATTTAACTGTTTATGACAATAATCTTAGTGGTGAGTTGCCAGAATCACTAGGAAATTGCAGTAGCCTACTTGATCTGAAAATTTACAACAATAAGTTTTCTGGTAACATTCCTACTGGACTTTGGACATCTTTGAATTTGTCAAATTTCATGGTGAGTCATAACAATTTCACTGGTGAGCTTCCTGAGAAGCTGTCCTCTAGCATTTCGCGGTTCGAGATAAGTTACAATCAATTTTCTGGTAGAATTCCTGCTAGTGTGTCTTCTTGGACTAATGTGGTAGTGTTTGATGCAAGCAAGAACAACTTGAATGGAAGCATTCCACAAGAGCTAACTTCTCTTCCAAGGTTAACAACCCTATTGCTTGTTCAGAATCAGCTCACCGGGCCGCTTCCTTCGGATATAATCCATTGGGAGAATCTAGTGACTCTGAATCTGAGACAGAACAAGCTCTCTGGACAAATACCAGATTCACTCGGCCGGTTACCGGTGCTTAGTCAGCTTGATCTTTCAGAAAATCAATTCACTGGCCAAGTTCCTTCTCAGCTTCCAAGACTCACCAATCTCAATCTTTCTTCCAATCATTTGACAGGAAAGGTTCCGAGTGAATTCGAAAATTCTGCATTTGACAACAGCTTTTTGGACAATCCTGGTCTTTGTTCTGATACCCCAGAATTGAAGCTTGCATTGTGTAATTCTACTCCACAAAGATCAAGAAAGGGTTCATCTTGGTCTGTTTCTTTGATTACAAGTCTTGCTGTAGCAGCCTTCTTACTGGCTTTGTTGGCAACACTCTTGATTATGAGGCTTCACAGAAAAAGAAAGCAAGAATTTGCTAACTCATGGAAGCTAATTTCATTCCAAAGGCTGAGTTTCACAGAATCAGACATTCTCTCCTCACTAACTGAGCAGAATATCATTGGCAGTGGTGGATATGGTACGGTTTATCGTTGTCCTGTCAATGGTTTCGGCTATGTTGCTGTGAAGAAGATTTGGAATGACAGAAAGTTTGATCAGAAGCTCAAGAGCTCGTTTCGCGCAGAAGTTAACGTGTTGAGCAATATTCGCCATACCAACATTGTGAGGTTGTTGTGCAGCATTTCAAATGAGGAATCTATGCTCCTTGTTTATGAGTACATGGTGAATAGTAGCCTAGATAAGTGGCTGCACAAGAAGTATAATAAGCCCTCCAATTTCTCAAGTTCAGCAGTGCATCATGTTGTTCTTGATTGGCCAAAGAGGTTGCAAATAGCAGAAGGAGTTGCACAAGGTCTGAGCTACATGCACCATGATTGCTCACAACCTGTTATTCATAGAGATGTGAAAACAAGCAACATTCTCTTGGATGCTCAATTCAATGCAAAAGTTGCAGATTTTGGTCTGGCTAGGATGTTGTTCAAGCCTGATCAATTGAACACCATGTCAACTGTGATTGGATCATTTGGCTACATTGCTCCTGAATATACTCAAACAACAAGGATCACTGAAAAGATTGATGTGTTTAGCTTTGGTGTTGTTCTATTGGAGCTGACAACTGGTAAAGAAGCCAATGATGGAGATCAACACTTGTCGCTCGCAGAGTGGGCGTGGCGCCACATTCAGATAGGAAGCAACATAGAAGAGCTTCTAGACAAAGATGTCATGGAACCAATCTACTTGGATGAAATGTGCACAGTTTTCAAACTTGGGATGATGTGTACTGCAACATTGCCTTCTACTAGGCCTTCAATGAAGGAGGTCCTGCAAATGTTGCAACTCTGCAGAGATCAATTTGCTTATGGAGGAGGAGGAGAAAGGAAATTAGGCCATTATGATGTTGTTCCTCTTCTTAAGGGTCCTAAAAGTGAAACAAGGTTGGATATTGTTGATACTTTATAA 3009 0.4061 MMSDAANSQSQLYDQEHAVLMRIKQYLQNPPFLSHWTQQSSISNNNHCSWPEINCTSSGNSVTSLTLSDSNITQAIPTFLCELKNLTSLDFSFNFIPGEFPTSLYNCSKLQYLDLSMNNFVGKIPDDMASYLSEMRYLNLGSTNFTGDIPSSIGRLKELRELKLHYCLFNGTIPDEIGNLSNLEYLDLSYNTMFPSWKLPSNFTQLTNLKVFHVYATNLVGEIPESIGEMVGLENLDMSQNGLTGGIPSGLFLLKNLTILYLFQNSLSGEIPKVVEALNLEDLDLAENNLTGKIPEDLGKLKNITWLNLSLNKLSGEIPDAFGSLPAMVDFRVFDNNLSGTLPSEFGRYSKLETFQVSSNSLSGNLPENLCYNGMLLNLTVYDNNLSGELPESLGNCSSLLDLKIYNNKFSGNIPTGLWTSLNLSNFMVSHNNFTGELPEKLSSSISRFEISYNQFSGRIPASVSSWTNVVVFDASKNNLNGSIPQELTSLPRLTTLLLVQNQLTGPLPSDIIHWENLVTLNLRQNKLSGQIPDSLGRLPVLSQLDLSENQFTGQVPSQLPRLTNLNLSSNHLTGKVPSEFENSAFDNSFLDNPGLCSDTPELKLALCNSTPQRSRKGSSWSVSLITSLAVAAFLLALLATLLIMRLHRKRKQEFANSWKLISFQRLSFTESDILSSLTEQNIIGSGGYGTVYRCPVNGFGYVAVKKIWNDRKFDQKLKSSFRAEVNVLSNIRHTNIVRLLCSISNEESMLLVYEYMVNSSLDKWLHKKYNKPSNFSSSAVHHVVLDWPKRLQIAEGVAQGLSYMHHDCSQPVIHRDVKTSNILLDAQFNAKVADFGLARMLFKPDQLNTMSTVIGSFGYIAPEYTQTTRITEKIDVFSFGVVLLELTTGKEANDGDQHLSLAEWAWRHIQIGSNIEELLDKDVMEPIYLDEMCTVFKLGMMCTATLPSTRPSMKEVLQMLQLCRDQFAYGGGGERKLGHYDVVPLLKGPKSETRLDIVDTL 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00018 1002 Pfam Leucine rich repeat 61 120 IPR001611 GO:0005515
Stsc30266g00018 1002 Gene3D Transferase(Phosphotransferase) domain 1 757 970 - -
Stsc30266g00018 1002 SMART serkin_6 678 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30266g00018 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Stsc30266g00018 1002 SUPERFAMILY Protein kinase-like (PK-like) 671 964 IPR011009 -
Stsc30266g00018 1002 SUPERFAMILY L domain-like 44 367 - -
Stsc30266g00018 1002 CDD STKc_IRAK 684 962 - -
Stsc30266g00018 1002 Gene3D Ribonuclease Inhibitor 13 172 IPR032675 -
Stsc30266g00018 1002 Gene3D Phosphorylase Kinase; domain 1 665 756 - -
Stsc30266g00018 1002 ProSiteProfiles Protein kinase domain profile. 678 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30266g00018 1002 PANTHER UNNAMED PRODUCT 199 895 - -
Stsc30266g00018 1002 Gene3D Ribonuclease Inhibitor 375 616 IPR032675 -
Stsc30266g00018 1002 FunFam Receptor-like protein kinase HSL1 658 756 - -
Stsc30266g00018 1002 FunFam Receptor-like protein kinase HSL1 isoform A 13 171 - -
Stsc30266g00018 1002 FunFam Receptor-like protein kinase HSL1 isoform A 284 608 - -
Stsc30266g00018 1002 FunFam Kinase family with leucine-rich repeat domain-containing protein 757 977 - -
Stsc30266g00018 1002 SMART LRR_typ_2 180 206 IPR003591 -
Stsc30266g00018 1002 SMART LRR_typ_2 230 254 IPR003591 -
Stsc30266g00018 1002 SMART LRR_typ_2 491 515 IPR003591 -
Stsc30266g00018 1002 SMART LRR_typ_2 83 107 IPR003591 -
Stsc30266g00018 1002 SMART LRR_typ_2 301 324 IPR003591 -
Stsc30266g00018 1002 SMART LRR_typ_2 560 588 IPR003591 -
Stsc30266g00018 1002 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 176 276 - -
Stsc30266g00018 1002 SUPERFAMILY RNI-like 279 586 - -
Stsc30266g00018 1002 Pfam Protein kinase domain 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30266g00018 1002 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Stsc30266g00018 1002 SMART LRR_sd22_2 491 520 - -
Stsc30266g00018 1002 SMART LRR_sd22_2 254 280 - -
Stsc30266g00018 1002 SMART LRR_sd22_2 83 115 - -
Stsc30266g00018 1002 SMART LRR_sd22_2 180 211 - -
Stsc30266g00018 1002 Gene3D Ribonuclease Inhibitor 173 276 IPR032675 -
Stsc30266g00018 1002 Gene3D Ribonuclease Inhibitor 277 374 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00018 Stsc-Chr30266 67345 70453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00018 10 962 Receptor kinase-like Gene Family AT5G25930 50.365 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30266g00018 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00018 - - ahf:112801804 1786.93