Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00012 ATGCTACCAAATCTCACAAATTTGGTGTCTTTGGAAGAAGTGATTTTCTCAGATAATCACTTCTCAGGGAAAATTCCTTCTGGGTATGTTGATCTTCCTAGCCTAAGAGTTTTGGAGCTGCAAGAGAATTACTTGAATGGTCAAATTCCACCCTTTGATCAACCATCATTGGAAAGTTTCAATCTTTCATATAATCAATTGGTGGGTCCTATTCCTCAGACTCATGTGATTCAAAGCTTTCCAGTGAGTTCCTTTGAATATAACACTGATCTTTGTGGAAAGCCATTGGATAAGCTATGTCCTGAATCACCTTCTCCTGCTCCATCTCCTATGCCAGAAGTTAGAAAAAATAAGAGACTCAAAGTTTGGATTATTGCTTTGATTGCTTCCTCTTCTGCACTGTTTCTGTTTCTGATCATCATTGCTTTGTTCTTGTTTTGTAAAAGAAGGGCTAGTGAAGAAGAAACAATTAGAAGAGAAGATTCAAAAGATTCAGCAGGGTATGTATTTGGAGCATGGGCGAAGAAAATGGTGTCTCAATCCTTCAGTGAAGATTCAGAAAGATTAGGAAGATTGGAATTTTCCAATAAGAAATTTCCAGTATTTGACTTAGATGATTTGTTAAGGGCATCAGCAGAAGTTCTAGGGAGGGGCAAATTGGGTATTACATACAAAGCATCACTTGAAAATGGTGCTCTTGTTGCTGTGAAGAGACTTAGCTGCATGAATGAGTTGAGCAAGAAGGAATTTCTTCAGCAGATGCAATTGCTTGGGAGAATGAAGCATGAAAATCTTGTAGAGATTGTGTCTTTCTATTATTCTGAGGAGCAAAAGCTGATCATTTATGAGTTCATGTCTGATGGCACTTTGTTTGAGCTCTTGCATGAGGGCAGAGGAATTGGAAGAATGGCACTTGATTGGAGCACAAGATTGTCCATTATCAAAGACATAGCAAAAGGTGTTGCATTCCTTCATGAATGTTTGCCATATCAGAAGGTCCCTCATGCAAACCTCAAATCAACCAATGTCCTAATCCAGCAAGATAGCCAAGGATCCTATTCCAATTCCAAGCTCACAGACTATGGATTCTTTCCACTCCTAACCTCAAAGAAAAACCATGGGGAGAAGCTAGCCATAAGCAGGTCAACAGAGTTTGTCAAAGGGAATAAGAAGCTAACACAGAAAACAGATGTTTATTGCTTTGGTATCATCATGCTTGAGATCATAACTGGGAAGATTCCTGGCCAAGTAACTAGTGCTGTTGAGATTGAAGGAGGAAGTGATCTTTCAAATTGGGTGAGAACTGTGGTGAACAATGATTGGTCCACAGATATATTGGATTTAGAGATATTAGCAGAAAAAGAAGGGCATGATGCAATGTTGAATTTAACTGAGTTAGCATTAGAATGCACTGATGTTACACCACAGAATAGGCCTAACATGAGTCAAGTGTTAAGGAGAATACAAGAGATTGAGCTAAATCAGAAAAGACAATAA 1497 0.3868 MLPNLTNLVSLEEVIFSDNHFSGKIPSGYVDLPSLRVLELQENYLNGQIPPFDQPSLESFNLSYNQLVGPIPQTHVIQSFPVSSFEYNTDLCGKPLDKLCPESPSPAPSPMPEVRKNKRLKVWIIALIASSSALFLFLIIIALFLFCKRRASEEETIRREDSKDSAGYVFGAWAKKMVSQSFSEDSERLGRLEFSNKKFPVFDLDDLLRASAEVLGRGKLGITYKASLENGALVAVKRLSCMNELSKKEFLQQMQLLGRMKHENLVEIVSFYYSEEQKLIIYEFMSDGTLFELLHEGRGIGRMALDWSTRLSIIKDIAKGVAFLHECLPYQKVPHANLKSTNVLIQQDSQGSYSNSKLTDYGFFPLLTSKKNHGEKLAISRSTEFVKGNKKLTQKTDVYCFGIIMLEIITGKIPGQVTSAVEIEGGSDLSNWVRTVVNNDWSTDILDLEILAEKEGHDAMLNLTELALECTDVTPQNRPNMSQVLRRIQEIELNQKRQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00012 498 SUPERFAMILY Protein kinase-like (PK-like) 213 488 IPR011009 -
Stsc30266g00012 498 Gene3D Ribonuclease Inhibitor 1 106 IPR032675 -
Stsc30266g00012 498 Gene3D Phosphorylase Kinase; domain 1 174 284 - -
Stsc30266g00012 498 Gene3D Transferase(Phosphotransferase) domain 1 285 498 - -
Stsc30266g00012 498 FunFam Leucine-rich repeat receptor-like protein kinase 10 102 - -
Stsc30266g00012 498 Pfam Protein kinase domain 212 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30266g00012 498 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 494 IPR046959 -
Stsc30266g00012 498 SUPERFAMILY L domain-like 3 80 - -
Stsc30266g00012 498 ProSiteProfiles Protein kinase domain profile. 209 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00012 Stsc-Chr30266 47464 49785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00012 2 492 Receptor kinase-like Gene Family AT1G68400 34.369 1.99e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30266g00012 Pkinase 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00012 - - aip:107641436 828.55