Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00011 ATGGCTACTAGAAGATATGCTTTTGGGAGGGTTGATGAGGCAACACACCCTGATTCCATGAGGGCTACCTTAGCTGAATTTGCATCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCACAGGCCTTGCTCTTGATAGGATATACAAGGATGCAGCATTCTCAGCAGGAGAACTGTTGGCACTAGCACTTGCACATGCATTTGCACTGTTTGCGGCGGTTTCGGCCAGCATGCATGTCTCCGGCGGCCATGTCAACCCGGCGGTGACATTCGGAGCTCTTATCGGCGGTAGGATCTCCGTTGTCCGTGCCTTATACTACTGGATTGCTCAACTTCTAGGCTCTATAGTGGCTTCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCAGGAGGGTTCCATGTGACAACAGGGCTTGGAGCAGGACATGGGCTTGTACTTGAAATAGTGATGACATTTGGGCTTATGTACACAGTATATGCCACTGCTATTGATCCCAAAAGGGGCTCAATTGGGGCCATTGCACCTTTAGCAATTGGGCTCATTGTTGGAGCAAACATCCTTGTTGGAGGCCCATTTGATGGGGCATGCATGAACCCAGCACTTGCATTTGGGCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTACTGGGTTGGCCCATTCATTGGGGCAGCCATTGCAGCAATCATATATGAATACATCATCATCCCAGTTGAGCCTCCTCATACTCATCAACCTTTGGCTCCTGAAGATTACTAG 768 0.4961 MATRRYAFGRVDEATHPDSMRATLAEFASTFIFVFAGEGTGLALDRIYKDAAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALIGGRISVVRALYYWIAQLLGSIVASLLLRLVTNNMRPGGFHVTTGLGAGHGLVLEIVMTFGLMYTVYATAIDPKRGSIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIYWVGPFIGAAIAAIIYEYIIIPVEPPHTHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00011 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 FunFam Probable aquaporin TIP1-1 4 253 - -
Stsc30266g00011 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 CDD MIP 21 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc30266g00011 255 PANTHER AQUAPORIN-8 6 248 IPR034294 -
Stsc30266g00011 255 Gene3D Glycerol uptake facilitator protein. 4 243 IPR023271 -
Stsc30266g00011 255 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30266g00011 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00011 Stsc-Chr30266 44211 46068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00011 2 255 Major Intrinsic Protein MIP AT1G17810 73.384 2.51e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00011 K09873 - gmx:100817450 411.379