Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00007 ATGGCTTGTGTAGCATCAGCAACCGCCTCCTCCTCCTACTCTTCTTTCACTACTACTATTCCGTTCACCTATGACGCTTTTCTCAGCTTCAGAGGTGAGGATACCCGTTCTGGCTTCACTGGCTATCTCTATTACACTCTCACAAATAGGGGAATCAACACTTTCATTGATGATGAGAAGCTTGGGAGAGGGAAGGAGATCGTATCCACACTTTTCACTGCAATCGAACAGTCCAGGATCGCAATCGTTGTGCTTTCGAAGAATTATGCTGCTTCTTCATTTTGTTTGGATGAACTTGTCAAGATTCTTGAGTGTGTTAAGGGAAAGGGCAGGTTGATTATTCCCGTTTTCTATGACGTGGATCCTTCTGATGTGCGGAAGCAGACAGGGACTTATGGAGAGGCATTGGCTGTGCATGAGAACAAGTTCAAGTTCAAGGCTAATAAGTTGGAGAGGCTGAAGAGATGGAGAATGGCTTTGGAGAAAATAGCAGACTTGTCTGGTTATCATTTCAAACACGGGGATGGATATGAACACAAGTTTGTTGCCAAAATTGTTGAACATGTATCAATAGAGAGTAAACGTGCTACTTTACCTACTGTTGATCACCCAATTGGATTGGATTCCCAAGTGGAAAATGTAATTTCTCTTTTGAATGTTGGGTCTAATGATGGAGTTTGTGTGCTAGGGATTCATGGAATCGGTGGAATAGGTAAAACAACACTTGCTGTGGCAGTGTATAATTGGCTTGTCGATCATTTTGCAGTTTTATTTGTTGACAGTATATGTTTCCATGAAAATATAAGAGAGAATTCAGATAAACATGGATTACAGAATCTGCAAAAGACCCTTCTGTTTGAACTAGTTGGAAAAAATAAAGCTGCACTGACTAGTGTTAGAGAGGGAATATCAATGTTAAAGCAAAGACTCCAACAAAAGAAAGTTTTTTTGATTCTAGATGATGTTGACCAACAAGAGCAGTTAGACGCACTTGCTGGAAAACTTGATTGGTTTAGTCCTGGTAGTAGAGTCATCATTACAACTCGAGACACGAGTTTACTATCAAGGTATGGGGATACAATAATGTATGAGTTAGATAAGTTGAATGATAAAGATTCTCTAGAATTGCTCAGTTTGAAAGCTTTAAAAACTAACAAAGTTGATCAAAGTCACTTGGACATCTTGAGCAATGTGGTAACTTATGCTTCTGGCCTACCATTGGCTTTGGAAGTAATAGGATCTAACTTTGTGGGCAAAAGTATAGATCAGTGGAAATCTGCATTAGATCAATACAGAAGAATTCCCAATAAAAAGATACAAACTGTGCTTAAGGTAAGCTTTGATGGATTGGAGGAATTTGAGAAGGAAATTTTTCTTGATATTGCTTGTTGTTTTAAAGGATGTGAATTGACAGATGTCAAAAGAATACTTTGTGCTCATCATAATGTCAACTCTTTGGACTATGGCCTTAGGGTATTGGTTGAAAAATCACTAATAAAAGTTGATTATTTTCGTGGAGTAATATTTCATGCCCTCATTCAAGACATGGGTAGAGAAATTGTGCGTCAGGAATCACCAAAAAAGCCTGGGAAGCGTAGTCGATTATGGCTCCTTGAAGATATAGTTCAAGTTTTTGAAATGAATATGGGATCTGACAAAATTGAAATGATACATATGGATTTTCCCAACTCTGAAAAAGAAATAAGATGGGATGGAGAGGCTTTCAAGAAAATGAGAAATCTCAGAACACTGTTTATTAGACATACTTATTTCTCTCAAGGTCCCAAGTATCTTCCAAATTGTTTAAGAGTGTTGATTTGGGATGAATATCCTTCACCTTCTTTACCACTAGATTTTCATCCGGAGGGACTTGTTGTATTCCAATTACCTCGCAGTAGTATAGGGTCAGTCAGGTTTCTTGAAAAGGGAAAGTACATGAGCTTGACGGTCATAACTCTTGATGGTTCTAAGTTAGAAGAGGTACCTGATATATCCGGAGTCCAAAATTTAGTAAAACTATCATTGGATAATTGTGTGAATTTAATTAAAATTCACGAATCAATTGGATGCTTAGATAAACTTAGCCTATTGAGTGCTCAAGGCTGCAGGAGGATCAAGAGATTTCCGTGTATCAAGTTGACCAATCTTCAATATCTCTGTCTTTCAGGGTGCTCTAGTCTTGAACATTTTCCAAAAATGTTAGGAAAATTAAAGCATATACTACAAATTTATGCAGATGATACTCTAATAACAGAATTGCCATCTGCTATTAAAAGGTTTTGTTTGCTTAGCCATTCAAGTATGATAAAGCATGCAGGAAGTAGTTTTCCACCAGGCCAAATTTTCATGTTTCCATATGAAGAGAAAGTGAGTTTTGAGAGGTCTGAAGTTGAAGAAGAACAAGGGAGTCCAATGGCACCTTTGGAGGCAAAACATTCTGCCTTCAAATATGAACCTTCCACAGCAGATCTTACCCGTTTTCGCAACGTGGAAGACTTAGACCTGTCAGAGCATCATTTCACAGTTCTTGATGAAAGCCTCAAAGAACTTTGCTCCTTGAAGTCACTTACTTTGAATGGCTGCACAAATCTTCGAGAAATTAAAGGGATTCCACCAAACATAAAGCATTTCTCTGCGAGAAACTGTGTATCCTTGACTCACGCCAGCAAAAACATGTTACTTAACAAGGAATTGCATGAGAATGGAGGCAAGGACTTTATTCTTCCAAGTAGTAGCATCCCAAAGTGGGTGGAGCATAGTAGCAACAATGATTCAATTTCTTTCTGGTTTCGCGGCGAGCTTCCTGAAATCTCTTTATGTGTTGTTGTTGAACCTCCGTTTGTTTTCTCGCGTACACACATTTGTCCGGAGTTCATCATCAACAGCAGCATAGGTACACCAGAACATATTGAATCAGTGGAGACATCCGGTCAATTAGAGGATCATATATTTATCATTGATCCAAAACTGATGAAGTCCAAAGTGAATGAAGTGATTTTAGAAAATGAGTGGAATCATGTTGTGTGTACAATTAAGTCTTGTGGCCACCAAAGGGGACCGGCTATCAAGAAACTTGGAATCTATTTTCACAAAGATAGAAGTAGCATGGAGAATATTCAATTTATTGATCCGCTGTTGCATAAAGAAGGGTTGAACATGGGAAATTTTCAGGTAAACATGCAACAACAGATGTATATGGCGCCACATGAAAGGAGGCTTCCATTGGATCTTCCTTTAGGAATGAGTTCATTGAATGATAATGTGAATAGGGAATCAAATTCCAGTGTCCAAGGCCCCTGTGTTGATGATTTATGTAAACTAAGGTTGGGCCTGGACTACATTGACGACCTGCCTTGTCATGCATCTTCAGAAAGGGATTATGATTCAGATTCAACATTGTTAATCTTAGCAAGTAATTATACTGCTAATGATGGAGAAAGTGATGACGATTTAAGGATGTATAGCATGCAGCTATCCCTTCGCCCATGTTGGCAAGAAACTTTGTGCTCTCGGAAACTAGGATCAACTTCAGTGCAATTAATATCCCCAAGCTACAACATCAGAGATGCAGAGACAGCAATGCCAGATCATCCTGTTAATATACCAGAAGAATATTCTCAATCCCCAGTTTTGGCCGAGACACAGAATATTCAAACATGTTGCACTGTGTTGCCAACAATGACAGATGAGTCTTTCAGAAATCAAGTTGATGTAAGCCAAGATGATGATGCTGATGATTTAGAAATGGAAGGATTCTATGCTTCTCTTGATGCTGAGACAAATGTTCTTTCGGTTTCTCCAAATGAAGAGATCAAGGAAGCACTGAAAATAGTACTAGACTTCATCACCAATAATAATGATGATGCTTCAGTGTTCTTGGATGCTCAACATTGCAGCACCATGAAAACCAGCTTAGATTATCTCTCCAGTTTGTCTGCTAATGATGGTTTATCAGGAGCGATGCGAGCATTGATATCTGAAGCTTCAACCTTGTTTGCACATTGTAGCAGTAGCTACATTGAAGCAAATATGCAAGTTGAGTCCACTGCTTCAGAACTGTTGAGAGCTGATAAATTAAAAGCTGAGCTTGAAGATAACAAGAATCAGTTCAATGATACGGTGGCATCAGAAAAAGAGCTGCAGCAGAAGTTGGCGTGTTTGGAGGAAATCAAAGATGAGCTAGAAAAGCAAATCAGAACTGCTAATGCTGACATCATGGCTTCTCGAAAAGAACAGAACACGACTCGAAAGAGAAAGAGACATATCTATGTGGAAGGAAAGGCACTCAAAGCTCGAATGGATGTGTTGAGCCAGAAAGTACCACATTTGCAACATGAGCATGATTTGGCAAAGGTAAACCAGGAAAAAATCAAAGCCAAATGGTCAGATTTTGGAAAAAAAATTAAAAAGATTGTTGCAGAGTGA 4425 0.3878 MACVASATASSSYSSFTTTIPFTYDAFLSFRGEDTRSGFTGYLYYTLTNRGINTFIDDEKLGRGKEIVSTLFTAIEQSRIAIVVLSKNYAASSFCLDELVKILECVKGKGRLIIPVFYDVDPSDVRKQTGTYGEALAVHENKFKFKANKLERLKRWRMALEKIADLSGYHFKHGDGYEHKFVAKIVEHVSIESKRATLPTVDHPIGLDSQVENVISLLNVGSNDGVCVLGIHGIGGIGKTTLAVAVYNWLVDHFAVLFVDSICFHENIRENSDKHGLQNLQKTLLFELVGKNKAALTSVREGISMLKQRLQQKKVFLILDDVDQQEQLDALAGKLDWFSPGSRVIITTRDTSLLSRYGDTIMYELDKLNDKDSLELLSLKALKTNKVDQSHLDILSNVVTYASGLPLALEVIGSNFVGKSIDQWKSALDQYRRIPNKKIQTVLKVSFDGLEEFEKEIFLDIACCFKGCELTDVKRILCAHHNVNSLDYGLRVLVEKSLIKVDYFRGVIFHALIQDMGREIVRQESPKKPGKRSRLWLLEDIVQVFEMNMGSDKIEMIHMDFPNSEKEIRWDGEAFKKMRNLRTLFIRHTYFSQGPKYLPNCLRVLIWDEYPSPSLPLDFHPEGLVVFQLPRSSIGSVRFLEKGKYMSLTVITLDGSKLEEVPDISGVQNLVKLSLDNCVNLIKIHESIGCLDKLSLLSAQGCRRIKRFPCIKLTNLQYLCLSGCSSLEHFPKMLGKLKHILQIYADDTLITELPSAIKRFCLLSHSSMIKHAGSSFPPGQIFMFPYEEKVSFERSEVEEEQGSPMAPLEAKHSAFKYEPSTADLTRFRNVEDLDLSEHHFTVLDESLKELCSLKSLTLNGCTNLREIKGIPPNIKHFSARNCVSLTHASKNMLLNKELHENGGKDFILPSSSIPKWVEHSSNNDSISFWFRGELPEISLCVVVEPPFVFSRTHICPEFIINSSIGTPEHIESVETSGQLEDHIFIIDPKLMKSKVNEVILENEWNHVVCTIKSCGHQRGPAIKKLGIYFHKDRSSMENIQFIDPLLHKEGLNMGNFQVNMQQQMYMAPHERRLPLDLPLGMSSLNDNVNRESNSSVQGPCVDDLCKLRLGLDYIDDLPCHASSERDYDSDSTLLILASNYTANDGESDDDLRMYSMQLSLRPCWQETLCSRKLGSTSVQLISPSYNIRDAETAMPDHPVNIPEEYSQSPVLAETQNIQTCCTVLPTMTDESFRNQVDVSQDDDADDLEMEGFYASLDAETNVLSVSPNEEIKEALKIVLDFITNNNDDASVFLDAQHCSTMKTSLDYLSSLSANDGLSGAMRALISEASTLFAHCSSSYIEANMQVESTASELLRADKLKAELEDNKNQFNDTVASEKELQQKLACLEEIKDELEKQIRTANADIMASRKEQNTTRKRKRHIYVEGKALKARMDVLSQKVPHLQHEHDLAKVNQEKIKAKWSDFGKKIKKIVAE 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00007 1474 Gene3D - 191 361 IPR027417 -
Stsc30266g00007 1474 Gene3D - 23 190 IPR035897 -
Stsc30266g00007 1474 Pfam TIR domain 24 197 IPR000157 GO:0007165
Stsc30266g00007 1474 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 169 IPR035897 -
Stsc30266g00007 1474 Coils Coil 1346 1411 - -
Stsc30266g00007 1474 SUPERFAMILY "Winged helix" DNA-binding domain 437 545 IPR036390 -
Stsc30266g00007 1474 SUPERFAMILY L domain-like 567 891 - -
Stsc30266g00007 1474 ProSiteProfiles TIR domain profile. 22 193 IPR000157 GO:0007165
Stsc30266g00007 1474 PRINTS Disease resistance protein signature 309 323 - -
Stsc30266g00007 1474 PRINTS Disease resistance protein signature 402 416 - -
Stsc30266g00007 1474 PRINTS Disease resistance protein signature 228 243 - -
Stsc30266g00007 1474 PRINTS Disease resistance protein signature 711 727 - -
Stsc30266g00007 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 461 IPR027417 -
Stsc30266g00007 1474 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 195 - -
Stsc30266g00007 1474 Gene3D - 367 451 IPR042197 -
Stsc30266g00007 1474 Gene3D Ribonuclease Inhibitor 558 762 IPR032675 -
Stsc30266g00007 1474 Gene3D Ribonuclease Inhibitor 806 927 IPR032675 -
Stsc30266g00007 1474 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 747 IPR044974 GO:0006952
Stsc30266g00007 1474 SMART till_3 23 166 IPR000157 GO:0007165
Stsc30266g00007 1474 Pfam NB-ARC domain 209 435 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00007 Stsc-Chr30266 23301 29952 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00007 24 763 WRKY Transcription Factor Family AT4G12020 30.819 2.22e-76 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00007 - - ahf:112747389 2346.62