Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00005 ATGGCCACTGGAGCATCAGCAGCGTCGCCGTCTTCGTCGTCGTTGTCGTTTTTCTCTTCATTTTCATTCACCTACGATGTGTTTCTGAGCTTCAGAGGTGAGGATACCCGGTTCGGGTTCACCGGGAATCTGCATTACGCTCTGACAAGCAAGGGAATCAAGACGTTCATCGACGACGAGGATCTCGGGAGAGGGAAGGAAATCACAGCCTCACTTGTAGAAGCAATCGAGAAGTCAAGGATTGCTATCGTTGTGCTGTCTAAGAACTATGCTGCATCTTCGTTTTGCTTGGATGAACTTTCCAAGATTGTGGAGTGCGTGAAGGGAAAGGGAAGGTTGATTATCCCAATTTTCTTTGACGTGGATCCTTCTGATGTGAGAAAGCAGACGGGGAGTTATGTGCATCAGAACAGGTTCAACGATGCGGAGAAGCTTATGAGATGGAGAATGGCTTTAAAGCACGTAGCTGATTTGTCCGGTTATCATTTCAAACACGGTGTTGCTTTACCATGTTCGCGTGCCAAGATCACAAAACGACATCGTTTAGAGGGAACTACGGTGTCATTTAACGGTCTACGTCAGCACACTATTGACAGAAATGGGGTTAGGGAGCTAATGGATGGATACGAACACAAGTTTGTTGCCAATATTGTTGAACTTGTGTCTCTACAGGTTAAACGTGCTACTTTACCTACTGTTGATCACCCAATTGGATTGGATTCCCAAGTGGAAAATGTAATTTCTCTTTTGAATGTTGGTTCTGATTATGGAGTCTCTGTGCTTGGAATTCATGGAATCGGCGGAATAGGTAAAACAACACTTGCTGTGGCAGTATATAACTGGATTGCCAGTCATTTTGCAGATTTGTCTTTTGAATGTATATATTTCCATGAAAGCATAAGAGAAAATTCAGATAAGCATGGATTACTGCATCTTCAAAAGATCCTTCTGTCTGAACTAGTAGGTGAAAACAAAGTTGCACTAACAAGTGTTAGAGAAGGAATATCAATGTTAAAGCGAAGATTCCAGCAAAAAAAAGTTTTCTTGATTCTAGATGATGTTGACCAACAAGAGCAGTTAGACGCTCTGGCCGGAAAATTGGATTGGTTTAGTCCTGGCAGTAGAGTTATCATTACAACTCGAGACACGAGTTTGCTGTCAAGGTATGAGAATAATATAAAATATGAGTTAGACAAGTTGGATGATAAGGAAGCTCTAGAGTTGCTTAGTTGGAAAGCATTGAAAACTAACGAAGTTGATCACAGTCACTTGGAAATCTTACGCAATGTGGTAACTTATGCTTCTGGCTTACCATTGGCTTTAGAAGTAATAGGGTCCAACTTCGCGAGCAAGAGTATGGAACAATGGAAATCTGCATTAGATCAATACAGAAGAATTCCCAATAAAAAGATACAAACCGTGCTTAAGGTAAGCTTCGATGGACTGGAGGAATTCGAGAAGGAAATTTTTCTTGATCTTGCTTGTTGCTTTAAAGGATGTGAATTCACAGACGTCAAAAGGATACTTTGTGCTCATCACAATGTCCTCTCATTGGAATATGGCCTTAGAGTGTTGGTTGAAAAATCGCTAATAAAAATTGATTCATACCGGGTGGTGTCGTTGCATGCTCTCATTCAAGATATGGGTAAAGAAATCGTTCGCCAAGAATCACCAAAAAAGCCTGGGAAGCGTAGTAGACTATGGCAACTTGAAGATATAGTTGAAGTTTTTGAAATGAACAAGGGAAGTGACAAAATCGAAATGATACACATGGAATTTCCCAATTTTGACAAAGTAATAAGATGGGATGGAGAGGCTTTTGGGAAAATGAGAAGTCTCAAAACACTGTTTATCAAAAAGGCTCATTTCTCACAAGGTCCCAAGTATCTTCCGAATAGTTTAAGAGTGTTGAACTGGGATGAATACCCTTCAGACTCTTTGCCACTTGATTTTCATCCGGAGGGACTTGTAATCTTTCAATTATCCGGTTGTAGTTTAAGGTCGGTCAGGTTTCTCGAGAAGCAGTACATGAACTTGACAATCATAAATCTTGAAAGGTCTAATGTAGAAGAGATACCTGATATCTCTGGTGTCCAAAATCTAGCAGAGTTAAAACTTAATAATTGTGTGAACTTGATCAAAATTCATGAATCAGTTGGATTCTTGGAAAAGATCAGGCTATTGAGTGCTCGAGATTGCAGGAGGCTTAAGAGATTTCCACTAATCAAGTTGACCAATCTTGCACATCTCTTTCTTTCAGGGTGCTCTAGTCTTGAGCATTTCCCACAAATGTTAGGAAAAGTAAGAAGTTTGCTAGAAATTGAATCAGAGGGTTCTCCCATAAAAGAACTGCCATCTTGTGTCAGAAATTTAACTTTGTTCAGTAGCAATTCGACCAGGGAAACTTATGCCGTGAAGTTCACATCATCACGTCGCATTTTCATGCTTCCATATCCAGAGATCTTGAGTTTTGAGAGGTCCATAGGTGAAGAGCAAGCAGGGAGAAGGAGCCCATCAATGGCTCCTTCAGAAGCAAGACATTTTGCCTATCAACAGGATGATCTATTCCATGAATCTTATCCAAGAGTTCACACTTGGCTTCACAATGTAGAATCCTTAGACCTGTCAGGCCATACTTTCACAGTTCTTCATGAAAGCATCAGAGAACTTTTATCCTTGAGGTCACTTACTTTGAATGACTGCAAACTACTTAGAGAAATTAGAGGGATTCCACTGACCATAAAGCGACTGTCTGCGAGAAACTGCATATCCTTGACTTCCACCAGCAAAAACATGTTACTTAACAAGGAATTGCATGAGGGTGGAGGCAAGGATTTTATTGTTCCAGGAAGTAGTATTCCAGAGTGGTTTGAGCATCACAGGAGCAATAAAGCTTCAGTTTCTTTCTGGTTCGGCAACAATCTCCCTGAAATCTCTTTATGTGTTCTTGTTGAACCTATGGCTGATCTTCTGAACTCATACATTTGCCCGGAGTTTATCATCAACGGCAATAAAGATCAACCAGAACATATCGAATGGTTGGAGACAAGCCATCAATTAGAGGATCACATAATTATTTTTGAGCCGAAAGTGATCAAGTCCAACTCCAAAGTGAATGAAGTGATTTCAGAAAATGGATGGAATCATGTGGTGTGTACAATTAAGCCACGGAATCAGAGGGGGCCAGCCATCAAGGGAGTTGGAATCTATTTTGTCAAAAACACAAAGGAGAATATCCGATTTGTTGATTCGCCGTTGCAGAAAGAAGAGGTGAACATGGAAGATGTTCAGGGAATGACTTCATTGGATGGTACTGTGAACGGTGGTGTAATTGACTCAAGAAATAGAAAAAGTGTATCAATGTTGGACTTGAACAGCAAACCATGTGAAGCAGACTCATTTTATGATCTGCCTTCAGAAGAGGATTTGGATTCGGACTGGGATTCAAGCTTGGATACTCATACTAGTGGTGAAGGAGCAGATGAGCCTTTCAGAAATCATCAAGTTGATATGAACCAAGATGACGATGATGATGTAGACATGGAAGAATTTTATGCTTCTCTCGATGCTGAGACAGATGTTGTTCCGTTTCCTCCAAATGAAGAGACCAGAGAAGCACTAAAAAGAGTTCAAGACCTCATCACCAATAATAATGATGCCTCAGTGTTCTTGGATGCTCAACATTGCAGCAACATGAAAACCAGCTTAGACTATCTCTCCAATCTGTCTTCCAGTGATGACGGCTTGTCAGAAGGAATGAGAGCATTGGTATCAGAAGCTTCACGAGTGTTTACTCATTGCAGTAGGGACTACGTTGAAGCAAGCACTAAAATCGAGTCCACTGCATCGGAGTTGATGAAAGCTAAAGAATTAGAAGCTGATTTGGAAGATAACAAGAACCAGTTCAAGGAAGTTTTGGCCTTAGAAAAAGAGCTGCTTCAAAGGCAAATCAATACTACAAATTCTAACATGACTAGGAAGAGAAAGAGAGATATCTTTGAGGAAGGGAAGAAACTCAAAACTCAAATGGAAAACTTGAAGAAGAAAGTACCACATTTGCAACATGAGCACGATTTGGCAAAGCAAACCCAAGCAAAAATCAATGTTGAATGGTCACACTTGAGAGAAAAATTTGAAAAGATTGTTGCAGAGTGA 4155 0.4051 MATGASAASPSSSSLSFFSSFSFTYDVFLSFRGEDTRFGFTGNLHYALTSKGIKTFIDDEDLGRGKEITASLVEAIEKSRIAIVVLSKNYAASSFCLDELSKIVECVKGKGRLIIPIFFDVDPSDVRKQTGSYVHQNRFNDAEKLMRWRMALKHVADLSGYHFKHGVALPCSRAKITKRHRLEGTTVSFNGLRQHTIDRNGVRELMDGYEHKFVANIVELVSLQVKRATLPTVDHPIGLDSQVENVISLLNVGSDYGVSVLGIHGIGGIGKTTLAVAVYNWIASHFADLSFECIYFHESIRENSDKHGLLHLQKILLSELVGENKVALTSVREGISMLKRRFQQKKVFLILDDVDQQEQLDALAGKLDWFSPGSRVIITTRDTSLLSRYENNIKYELDKLDDKEALELLSWKALKTNEVDHSHLEILRNVVTYASGLPLALEVIGSNFASKSMEQWKSALDQYRRIPNKKIQTVLKVSFDGLEEFEKEIFLDLACCFKGCEFTDVKRILCAHHNVLSLEYGLRVLVEKSLIKIDSYRVVSLHALIQDMGKEIVRQESPKKPGKRSRLWQLEDIVEVFEMNKGSDKIEMIHMEFPNFDKVIRWDGEAFGKMRSLKTLFIKKAHFSQGPKYLPNSLRVLNWDEYPSDSLPLDFHPEGLVIFQLSGCSLRSVRFLEKQYMNLTIINLERSNVEEIPDISGVQNLAELKLNNCVNLIKIHESVGFLEKIRLLSARDCRRLKRFPLIKLTNLAHLFLSGCSSLEHFPQMLGKVRSLLEIESEGSPIKELPSCVRNLTLFSSNSTRETYAVKFTSSRRIFMLPYPEILSFERSIGEEQAGRRSPSMAPSEARHFAYQQDDLFHESYPRVHTWLHNVESLDLSGHTFTVLHESIRELLSLRSLTLNDCKLLREIRGIPLTIKRLSARNCISLTSTSKNMLLNKELHEGGGKDFIVPGSSIPEWFEHHRSNKASVSFWFGNNLPEISLCVLVEPMADLLNSYICPEFIINGNKDQPEHIEWLETSHQLEDHIIIFEPKVIKSNSKVNEVISENGWNHVVCTIKPRNQRGPAIKGVGIYFVKNTKENIRFVDSPLQKEEVNMEDVQGMTSLDGTVNGGVIDSRNRKSVSMLDLNSKPCEADSFYDLPSEEDLDSDWDSSLDTHTSGEGADEPFRNHQVDMNQDDDDDVDMEEFYASLDAETDVVPFPPNEETREALKRVQDLITNNNDASVFLDAQHCSNMKTSLDYLSNLSSSDDGLSEGMRALVSEASRVFTHCSRDYVEASTKIESTASELMKAKELEADLEDNKNQFKEVLALEKELLQRQINTTNSNMTRKRKRDIFEEGKKLKTQMENLKKKVPHLQHEHDLAKQTQAKINVEWSHLREKFEKIVAE 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00005 1384 Gene3D - 18 179 IPR035897 -
Stsc30266g00005 1384 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 171 - -
Stsc30266g00005 1384 SUPERFAMILY "Winged helix" DNA-binding domain 469 577 IPR036390 -
Stsc30266g00005 1384 Pfam TIR domain 25 154 IPR000157 GO:0007165
Stsc30266g00005 1384 SUPERFAMILY L domain-like 594 933 - -
Stsc30266g00005 1384 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 926 IPR044974 GO:0006952
Stsc30266g00005 1384 Pfam NB-ARC domain 241 468 IPR002182 GO:0043531
Stsc30266g00005 1384 MobiDBLite consensus disorder prediction 1133 1172 - -
Stsc30266g00005 1384 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 161 IPR035897 -
Stsc30266g00005 1384 PRINTS Disease resistance protein signature 742 758 - -
Stsc30266g00005 1384 PRINTS Disease resistance protein signature 434 448 - -
Stsc30266g00005 1384 PRINTS Disease resistance protein signature 341 355 - -
Stsc30266g00005 1384 PRINTS Disease resistance protein signature 260 275 - -
Stsc30266g00005 1384 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Stsc30266g00005 1384 Coils Coil 1278 1308 - -
Stsc30266g00005 1384 Gene3D - 399 483 IPR042197 -
Stsc30266g00005 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 493 IPR027417 -
Stsc30266g00005 1384 Coils Coil 1329 1363 - -
Stsc30266g00005 1384 Gene3D - 218 395 IPR027417 -
Stsc30266g00005 1384 SMART till_3 24 158 IPR000157 GO:0007165
Stsc30266g00005 1384 Gene3D Ribonuclease Inhibitor 590 797 IPR032675 -
Stsc30266g00005 1384 MobiDBLite consensus disorder prediction 1158 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00005 Stsc-Chr30266 14856 20371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00005 18 794 WRKY Transcription Factor Family AT4G12020 28.925 1.04e-72 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00005 - - ahf:112747389 1398.26