Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30266g00002 ATGGAATGGTGGAAATATCCTTCAAAATATTTTCCATCTGATTTTCATCCAAAGAAACTATCCATACTCAAGTTACCCAATTCACTCTTTATGTCTTGCAAGTTGGATAGCTTATTCACCAAGAAACTGGTCGCCTTAAAAGTATTGAATTTCGACAACAGTGATTTCTTGAAAGAGATACCTGATGTATCTAATCTTCCAAGTTTAGAAGAATTATCATTTAGAGGTTGCAACAATTTAACTAGAATTCACAGTTCCGCTGGTTTTCTTGGTAAACTTAAAATCTTGAATGCTGAACATTGCCACAAGCTCAGGTCTTTTCCATCTATGAATTTGCCATCACTCAAAATACTTTTGTTGTCTGGTTGCTCAAGTCTTGAGAAATTTCCTGAAATGCTAGGAAAGATGGAAAATGTGGAAATGCTTCGTTTGAGCCGCACGGACATAAGAGATTTGCCATTGTCATTTCGAAACCTTTCTGAGTTATATACTCTGACTATGTCCGGCAATAAAATTCAAAGGATACCAAGTGTGGTTTTCATAATGCCAAAGTTGTCTTCATTTTATATAGATGGAACTCAAGGTAATAGGTTAGAATCACAAAAGCAGGATGAAGGGATGGAAGGAATAGTGACCTCCTTCAGCTCTTCAAGTGTGCGTTTTCTTTATCTCTATTTCTCGAAGCTGTCAGATGACTTTATGGTGCAACAGCTACCATGGTTTCCGAACTTGAAAAGATTAGACCTAACACGCAGTGATATCACAATCATTCCCGAATGCATCCAAGAATTCCAGTTTCTATCTCGGCTCCAAGTGGATAGTTGCAGGCATCTTCTAGAGATTAGAGGGATTCCCCCAAACCTACAAAATTTCTCCGCATTATACTGTGAATCCCTGACTCCCTCCACTACAAGCATGTTACTCAATCAGGAATTGCACGAGAAGGGAAACACGCATTTTGTTATGCCACGAGCATATGGATCCATTCCAAGTTGGTTTGAGCACCGCAGTGAAGAAACTAATTCTATTTCTTTCTGGTTTCGTGGCAAATTCCCTGCCAAATCTCTTTGTCTTGCAATTCTACTCAATTATTCGCAGGAGGTAACGCCCATCGTGACCATCAATGGCAAGAAAGTTTCCTGTGGAAGTGGGAAAACCTATGTGGAGCGATTATTTATTTTTGATCTGTGGAAGACAAATTACAAGTATGATTCGGATGAATTACTTTTTGAAAGCCAAGAATGGAATCATGCGGAGGTTTCATGGGAAGTAACTGCTGCAGAGATTGGAATGCACATATTGAACCAAAATTGTAGTAGTATCATGCAAGATATTCGATTCACCCATCCTTATAGAAAGAGAAAAAGAGACGATCGTGATTTCTCTCAATAG 1392 0.3872 MEWWKYPSKYFPSDFHPKKLSILKLPNSLFMSCKLDSLFTKKLVALKVLNFDNSDFLKEIPDVSNLPSLEELSFRGCNNLTRIHSSAGFLGKLKILNAEHCHKLRSFPSMNLPSLKILLLSGCSSLEKFPEMLGKMENVEMLRLSRTDIRDLPLSFRNLSELYTLTMSGNKIQRIPSVVFIMPKLSSFYIDGTQGNRLESQKQDEGMEGIVTSFSSSSVRFLYLYFSKLSDDFMVQQLPWFPNLKRLDLTRSDITIIPECIQEFQFLSRLQVDSCRHLLEIRGIPPNLQNFSALYCESLTPSTTSMLLNQELHEKGNTHFVMPRAYGSIPSWFEHRSEETNSISFWFRGKFPAKSLCLAILLNYSQEVTPIVTINGKKVSCGSGKTYVERLFIFDLWKTNYKYDSDELLFESQEWNHAEVSWEVTAAEIGMHILNQNCSSIMQDIRFTHPYRKRKRDDRDFSQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30266g00002 463 SMART LRR_typ_2 241 263 IPR003591 -
Stsc30266g00002 463 SMART LRR_typ_2 159 182 IPR003591 -
Stsc30266g00002 463 SMART LRR_typ_2 136 158 IPR003591 -
Stsc30266g00002 463 SMART LRR_typ_2 66 90 IPR003591 -
Stsc30266g00002 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 9 138 - -
Stsc30266g00002 463 Gene3D Ribonuclease Inhibitor 134 317 IPR032675 -
Stsc30266g00002 463 Gene3D Ribonuclease Inhibitor 7 133 IPR032675 -
Stsc30266g00002 463 SUPERFAMILY L domain-like 4 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30266g00002 Stsc-Chr30266 4525 6100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30266g00002 1 307 WRKY Transcription Factor Family AT4G12020 30.094 1.85e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30266g00002 - - aip:107644584 452.595