Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30264g00019 ATGCTTGCTGTTCATCAGAACAAAGCTTGCAACTTTCTCTACTTTTTCTTCTGCATGGTGGTGATGATGATCACAGTGTGTTATGGTGCTACAGACCCAAATGATCTCAAAATTCTGAATGATTTCAGAAAAGGGTTGCAAAATCCCGAGCTTCTCAAATGGCCAGAGAATGGAGTAGGTGACCCTTGTGGCAATCCTCCATGGCCTTATGTGTACTGCAATGGTGACAGGGTCACTCAGATTCAGTCAAAGAATCTTGGTCTCAAAGGTTCACTCCCTCAGAATTTCAATCAGCTCACAGAACTCCAGAATCTTGGTCTCCAAAGGAACAACCTCAGTGGGGCTTTACCAAGTTTCAATGGATTGTCCAAATTGGAATATGCTTTCTTGGATTACAATGAATTTGACACAATCCCTTTTGATTTCTTCAAAGGACTCACAAACATAAAGATCTTGTCTTTGGAGATGAACCCTTCTTTGAATGCAACCACAGGGTGGTCTTTTCCTATGGACTTGAAAGATTCATTGCAGTTGATCAATCTCTCTTTTGTGCACTGTAATCTGGTTGGACCATTGCCTGATTTTGTAGGCACATTGCCTTCACTTCTGAATCTGAGGCTCTCATACAACAAAATCTCTGGTGGAATTCCAAATAGTTTTGGCCAATCTTCAATTCAGGTTTTGTGGCTCAATAATCAAGAAGGTGGTGGCATGAGTGGTTCTATTGATGTTATTGCCTCTATGACTTTTCTTACTCAGGTCTGGCTTAATGGAAACAAGTTCAATGGGGAAATTCCACAAAACATTGGGAATTTAACTTCCCTGAAGGAGATTAACCTCAATGGAAACCAACTTGTTGGTTTGATTCCGGAATCAATGGCAAATATGGACCTTGATATAGTTGATTTAAGCAATAACATGTTAATGGGGCCAATACCAAAGTTTAAGGCAGCTACACAAGTATCTTATGCTTCAAATTTCTTTTGTCAAAGTAAGCCTGGGATTCAATGTGCTCCTGAAGTTAATTCACTGATAGATTTTCTGCATAGTCTGAACTATCCTTCAATTCTAAGTTCTGAATGGTCTGGTAATGATCCTTGTGGAGGGAACTGGATTGGATTGAGCTGCAATCAGAATTCTGAGGTATCTCTCATCAATTTGCCTAGGAGAAATCTTAGTGGTACATTGAGTCCTTCAATTGCTAAGTTGAATTCACTTGTTAGGATTATGCTTGCAGAAAATAATATAAGTGGAAGAATTCCTAGTAATTTTACTGAATTGAAATCATTGAGTTTGTTGGATTTGAGTTATAACAATGTTGAGCCTCCATTGCCAAAGTTCAATGATGGTGTGAAGGTTGTTATTGATGGAAACCCTCTTTTTGCTGATCAACATGGAAATAGTACCTCACCTATTAGTAGTCCACAGCCTTCACCGCCGAATCCGTATCCGGCATCACCACAACCTCTGCTATCTCCACCACCTAAACCAAAACCAAAGCCAACACCCTCCCATGTTACACCTTCCCTTGCTCCGGTTCAAAGATCAAATGGCTTGAAAAGATCAAAATTGACATTATTACTTGGTGGTGTTGGAATCTTTACATTTGTGGCTATTTTGCTTGTTTCTCTCTTTGTGTGTTGTTTGAAGAAGAAAAAGGCTTGTAGAAATCTTAATCTTCACACTCATGATACATATAATCCGGAAACAATGGTGAAGTTCGCAGTTTCGAACTGTGACACTGAAACCAAGTCAACCAAGACAAGGATAAGTAATGTGAGTAACCTCAGTGGTGAAACTGAAACCACTCACATGAGTGAGTCTGGAAACTTTGTCATATCGGTACAAGTTTTACGCGAGGTCACCAAGGATTTCGCTGCCGAAAATGAGCTAGGCCGAGGCGGGTTTGGAACTGTTTACAAGGGTGAACTAGGAGATGGAACCAAGATAGCAGTGAAGAGAATGGAGAATAGAGCTATCAGCAGTAAGGGAGTGGATGAATTCCAGGCCGAAATAGCCGTTCTTTCTAAGGTCCGTCACCGGCATTTGGTGTCCCTTCTAGGCCACGCCATAGAAGGACATGAAAAGCTATTGGTTTATGAATACATGCCTTTAGGTGCTCTAAGCAAGCATCTTTTTCAATGGGAAAGATTGAACTTGGAGCCTCTGTCTTGGTCTCAGAGGCTTGTGATAGCACTTGATGTTGCTAGAGGAATGGAATACCTTCATGGTCTTGCTCGCCAGACCTTCATACATCGAGACCTCAAGTCTTCCAACATTTTACTCGGTCATGATTTTCGGGCAAAAGTTTCAGATTTCGGCCTTGTGAAACTTGCCCCTGATGGGAACAAGTCTGTGGCTACAAAGCTTGCCGGAACCTTTGGATACCTTGCCCCCGAATACGCAGTGATGGGTAAAATCACCACGAAAGTTGATGTGTTCAGTTACGGAGTGGTGTTGATGGAACTTCTAACCGGACTAATGGCCCTGGACGAGAGCCGGCCGGAGGAGAACCGGTACTTAGCCGAATGGTTTTGGCAAATAAAATCAAGCAAGGAAAAGCTTCTTGCTGCCATGGATCCTGCTCTCAAAGTGAGCCAAGACATATTCGAGAGCATCTACATTGTCGCGGAGCTTGCCGGACACTGCACGGCGAGGGAAGCGAACCATCGGCCGGACATGAGTCATGCGGTCAACGTGCTCTCGGCATTGGTGGAGAAATGGCAGCCGGTCAACGAAGAAGTCAACGGTGACTCCGGCATTGACTACAACCAACCACTATCACAGATGTTGAAAGTTTGGAAGGAAGCAGAAGGCAGAGAAGTTGGGTACACTAGTCTTGAAGATAGTAAAGGAAGTATACCAGCTAAGCCTACTGGTTTTGCTGATTCCTTCACTTCTGCTGATGCTAGATGA 2916 0.4283 MLAVHQNKACNFLYFFFCMVVMMITVCYGATDPNDLKILNDFRKGLQNPELLKWPENGVGDPCGNPPWPYVYCNGDRVTQIQSKNLGLKGSLPQNFNQLTELQNLGLQRNNLSGALPSFNGLSKLEYAFLDYNEFDTIPFDFFKGLTNIKILSLEMNPSLNATTGWSFPMDLKDSLQLINLSFVHCNLVGPLPDFVGTLPSLLNLRLSYNKISGGIPNSFGQSSIQVLWLNNQEGGGMSGSIDVIASMTFLTQVWLNGNKFNGEIPQNIGNLTSLKEINLNGNQLVGLIPESMANMDLDIVDLSNNMLMGPIPKFKAATQVSYASNFFCQSKPGIQCAPEVNSLIDFLHSLNYPSILSSEWSGNDPCGGNWIGLSCNQNSEVSLINLPRRNLSGTLSPSIAKLNSLVRIMLAENNISGRIPSNFTELKSLSLLDLSYNNVEPPLPKFNDGVKVVIDGNPLFADQHGNSTSPISSPQPSPPNPYPASPQPLLSPPPKPKPKPTPSHVTPSLAPVQRSNGLKRSKLTLLLGGVGIFTFVAILLVSLFVCCLKKKKACRNLNLHTHDTYNPETMVKFAVSNCDTETKSTKTRISNVSNLSGETETTHMSESGNFVISVQVLREVTKDFAAENELGRGGFGTVYKGELGDGTKIAVKRMENRAISSKGVDEFQAEIAVLSKVRHRHLVSLLGHAIEGHEKLLVYEYMPLGALSKHLFQWERLNLEPLSWSQRLVIALDVARGMEYLHGLARQTFIHRDLKSSNILLGHDFRAKVSDFGLVKLAPDGNKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSSKEKLLAAMDPALKVSQDIFESIYIVAELAGHCTAREANHRPDMSHAVNVLSALVEKWQPVNEEVNGDSGIDYNQPLSQMLKVWKEAEGREVGYTSLEDSKGSIPAKPTGFADSFTSADAR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30264g00019 971 Pfam Protein tyrosine and serine/threonine kinase 628 899 IPR001245 GO:0004672|GO:0006468
Stsc30264g00019 971 SMART serkin_6 625 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30264g00019 971 MobiDBLite consensus disorder prediction 464 514 - -
Stsc30264g00019 971 Gene3D Transferase(Phosphotransferase) domain 1 703 924 - -
Stsc30264g00019 971 MobiDBLite consensus disorder prediction 473 506 - -
Stsc30264g00019 971 FunFam Receptor-like kinase TMK4 33 334 - -
Stsc30264g00019 971 FunFam receptor protein kinase TMK1 703 920 - -
Stsc30264g00019 971 Gene3D Ribonuclease Inhibitor 339 464 IPR032675 -
Stsc30264g00019 971 Gene3D Ribonuclease Inhibitor 33 335 IPR032675 -
Stsc30264g00019 971 SUPERFAMILY Protein kinase-like (PK-like) 603 901 IPR011009 -
Stsc30264g00019 971 SUPERFAMILY L domain-like 31 319 - -
Stsc30264g00019 971 PANTHER OSJNBA0070M12.3 PROTEIN 16 971 - -
Stsc30264g00019 971 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Stsc30264g00019 971 SMART LRR_typ_2 199 222 IPR003591 -
Stsc30264g00019 971 SMART LRR_typ_2 99 121 IPR003591 -
Stsc30264g00019 971 SMART LRR_typ_2 272 295 IPR003591 -
Stsc30264g00019 971 SMART LRR_typ_2 122 145 IPR003591 -
Stsc30264g00019 971 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Stsc30264g00019 971 Pfam Leucine rich repeat N-terminal domain 339 377 IPR013210 -
Stsc30264g00019 971 ProSiteProfiles Protein kinase domain profile. 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30264g00019 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Stsc30264g00019 971 MobiDBLite consensus disorder prediction 947 971 - -
Stsc30264g00019 971 FunFam receptor protein kinase TMK1 587 702 - -
Stsc30264g00019 971 FunFam Leucine-rich repeat receptor-like kinase 339 464 - -
Stsc30264g00019 971 SUPERFAMILY L domain-like 340 446 - -
Stsc30264g00019 971 Gene3D Phosphorylase Kinase; domain 1 584 702 - -
Stsc30264g00019 971 CDD STKc_IRAK 631 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30264g00019 Stsc-Chr30264 139548 143127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30264g00019 88 914 Receptor kinase-like Gene Family AT1G55610 29.291 2.92e-78 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc30264g00019 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30264g00019 K00924 - gmx:100815045 1327.38