LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30264g00016	ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAACAGATCGGAAGAGGTGCTTTTGGAGCTGCCATCCTTGTAAATCACAAAGCAGAGAAGAAAAAATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAAAGATGCAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTAGAATCCAGCATCCTTACATTGTAGAATTCAAGGAGGCCTGGGTTGAGAAGGGTTGCTATGTCTGTATTGTTACCGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAGAAAACAAATGGTGCCTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTGCTCTTGGCAGTGGAATACTTGCATTCAAATTTTGTTTTACATCGCGACCTCAAGTGTTCCAACATTTTTCTTACCAAGGACCAAGATGTTCGCCTGGGGGATTTTGGGCTCGCTAAGACGCTAAAAGCAGATGATTTGGCTTCGTCGGTGGTCGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCGGATATTCCCTATGGATTCAAATCTGATATCTGGTCACTAGGGTGCTGTGTATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCGTCTATTGGCCCGTTGCCTCCTTGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGAATGTTAAGAAAAAATCCGGAGCATCGGCCTACAGCATCGGAAGTTTTAAAGCATCCTTACTTGCAACCTTATGTTGATCAGTATCGTCCGGCTTTTAGTTCTCCAACATCCTGTTCTCCAGGAAAACCGATTTCATCTGTCATTTATTCTCGAAAAAATATGGCTGAAAGTCAAAGCAGTACTAGTTCAAGCAGTGACAAAGATAGTTTGATGTCACATGAGAGACACGTTGCGACATCAGTGCCGGGGCATAACAAAGCCACCGAGACAGATATGGCATCAATTGATGACGATAGCTCTGAGAATCTCCTTGCTAGTGAAGAAGAAAATGGCTCTAGTAATGTCAATGCCAAAGCAACTGAGCAAGAAGTGACGAAACCATCCTATAATGAGCTATGCTCTAATATTGAATCTAAGCAGCCCAAAACAATTAGAAATATAATGATGGCATTAAAAGAAGGAAAACTTAGAGAAGCAAATTCTCCGATGAGAGGCAATCGCATAAAGCCTGTTGGTGTATCAACACCGAAAGCAAATATAGAGACATCGTCCAAATTGCCAAAACCCAATTTCACGGCTCCTGGATTGAAGCCAAATGTAGAGTCACCAGCTGTTGCACATCCAAAGGGATCCCCTGACTCTGCAAAACGAATACAAGGATCAAATCCTTCAAGGCTTCAGTCACCAGTGGCAGAATCCTCACCAAAAGTGAAACCTAGGCATGATTTGACTTCGCCATCTGGCAATGTCAAACCAGTAGAGGGAGATGGACTTCCTGATAGAACATTGCAACGGACTCCCCCTACCTTAATTAGACGACCTTCATTTCCAGCTCGAATGAAGTCAGTTGGACTTGATGTTCCGAATGTAGCAAATGATAATGGGAAGCCAGCTGCTAGAGAGCCCCAGAAGGCTTTTGGCCGAAGCTCCAAAGCAATGCAAACAGACAGCAGTAATTCTGCATCGTCTTCAGTCTCTATTCAAGGATGTGAAATTTATGATGATGCAACAATTTTTATTGACATGAGAGAAGAGACACTTCCTGATAGTGAGAATGTAGTCCACGATGTAGGTGCAGAATCGTGTCGAGACAGCGGCCCACCTACAACCTGTTCACATTGTAAGAAGGTTGAAAAGGTTCTCAACGAGACTGATGAGGTTACTCTGAGTTTTCGGGACACTACTAGTAGCAATGAGAAAATGGGTTCAAGGATAAGTCTTGATCACCCTGTTGAAGATTCTAAGGCTACTTTTGCATCAGAAGAAAGCCTTCATGTGAACCATACAAATATCAATGTTTCATCTGGATGTGATAATAAATCTGTTGGCCATCATGCTGAAGCCGCAGAGGAAATCATAGATCATCAAGATATTTCTAAGGAAATAACATTAACCACGCCTATCCAACATCCACTCGAAAGCTCTGCAGAAAACCTGGTTTGTGATGGTGTTTCTGTAAGGAAGTCTGATGGTAAGTCTGAAATAGTTTGTCAGCTGGAACCTGTGCATAAGTCCTCTGGCGAAGATAAATTCACAGTGAGGGAGCGATTATCATCAGTGGCTGAAACTGCTCCGGTGATTACAACTACTAAGCTATTGAGCCAGAAAGTCTTGCAAGAGGAAGGACCTGTCATTCAGAATCCAGCACCAGAAGGGCCAGATGCTGGCCATCTTCCTCCGGCCTTTGATGATGTCATCCATGTAATACGCCATAGCAGTTACTGCGTTGGAAGTGAGCAGCCTGCGAAAGAATCGGTCGAGAAAGGAGTTCAAAATTTAGATGTTGGTAAGTTCATCAATGTTGCAAGGGATGATGTGGAAGCAAGAAATGCAAGCCCTCCGTTGACATTGAAATCTTCTAGCTGCTCTGAACCCCCAAGCACGAAACCAAATACTTCCAATCAGTTGGAAATGAGAAACAATAGCACTCCACCGACCCTTAAATCTTCAAGTTTCTCTGATGCTTCATGCATGAAATCAAGTATTTCTGATCATTCTGGTCTAAAGGAACAAGATGTAAGCAACCCGGTTTCATTAGTTTCTGAATCTAATTCTGCTGAGTTATGTAAACACAATACTCCTACGACGGAAGACAAACCACCGGCAAAGGAAATACTGGATGTGAAATCTTTCAGGCAGAGAGCCGAGGCGCTTGAAGAGCTCCTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTCGTTCTCAAGCCCTTCGGGAAAGACAAGGTTTCCCCAAGGGAGACAGCGATTTGGTTAGCGAAAAGTCTGAAAGGAATGATGTCCGAGGAAAGCGGAGGACGCAGTTCATCATGA	3054	0.4345	MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKTNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSSPTSCSPGKPISSVIYSRKNMAESQSSTSSSSDKDSLMSHERHVATSVPGHNKATETDMASIDDDSSENLLASEEENGSSNVNAKATEQEVTKPSYNELCSNIESKQPKTIRNIMMALKEGKLREANSPMRGNRIKPVGVSTPKANIETSSKLPKPNFTAPGLKPNVESPAVAHPKGSPDSAKRIQGSNPSRLQSPVAESSPKVKPRHDLTSPSGNVKPVEGDGLPDRTLQRTPPTLIRRPSFPARMKSVGLDVPNVANDNGKPAAREPQKAFGRSSKAMQTDSSNSASSSVSIQGCEIYDDATIFIDMREETLPDSENVVHDVGAESCRDSGPPTTCSHCKKVEKVLNETDEVTLSFRDTTSSNEKMGSRISLDHPVEDSKATFASEESLHVNHTNINVSSGCDNKSVGHHAEAAEEIIDHQDISKEITLTTPIQHPLESSAENLVCDGVSVRKSDGKSEIVCQLEPVHKSSGEDKFTVRERLSSVAETAPVITTTKLLSQKVLQEEGPVIQNPAPEGPDAGHLPPAFDDVIHVIRHSSYCVGSEQPAKESVEKGVQNLDVGKFINVARDDVEARNASPPLTLKSSSCSEPPSTKPNTSNQLEMRNNSTPPTLKSSSFSDASCMKSSISDHSGLKEQDVSNPVSLVSESNSAELCKHNTPTTEDKPPAKEILDVKSFRQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSSS	1017

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30264g00016	1017	MobiDBLite	consensus disorder prediction	294	367	-	-
	Stsc30264g00016	1017	MobiDBLite	consensus disorder prediction	854	918	-	-
	Stsc30264g00016	1017	FunFam	Serine/threonine-protein kinase Nek5	90	336	-	-
	Stsc30264g00016	1017	MobiDBLite	consensus disorder prediction	549	566	-	-
	Stsc30264g00016	1017	ProSiteProfiles	Protein kinase domain profile.	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30264g00016	1017	MobiDBLite	consensus disorder prediction	338	367	-	-
	Stsc30264g00016	1017	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Stsc30264g00016	1017	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Stsc30264g00016	1017	SMART	serkin_6	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30264g00016	1017	MobiDBLite	consensus disorder prediction	850	918	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30264g00016	Stsc-Chr30264	106942	112302	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30264g00016	12	287	MAP Kinase Kinase Kinase	AT3G06030	31.944	1.08e-36	146

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Stsc30264g00016		Pkinase	8.7e-66	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30264g00016	K08857		-	gmx:100784761	1377.07

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