Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30264g00016 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAACAGATCGGAAGAGGTGCTTTTGGAGCTGCCATCCTTGTAAATCACAAAGCAGAGAAGAAAAAATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAAAGATGCAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTAGAATCCAGCATCCTTACATTGTAGAATTCAAGGAGGCCTGGGTTGAGAAGGGTTGCTATGTCTGTATTGTTACCGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAGAAAACAAATGGTGCCTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTGCTCTTGGCAGTGGAATACTTGCATTCAAATTTTGTTTTACATCGCGACCTCAAGTGTTCCAACATTTTTCTTACCAAGGACCAAGATGTTCGCCTGGGGGATTTTGGGCTCGCTAAGACGCTAAAAGCAGATGATTTGGCTTCGTCGGTGGTCGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCGGATATTCCCTATGGATTCAAATCTGATATCTGGTCACTAGGGTGCTGTGTATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCGTCTATTGGCCCGTTGCCTCCTTGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGAATGTTAAGAAAAAATCCGGAGCATCGGCCTACAGCATCGGAAGTTTTAAAGCATCCTTACTTGCAACCTTATGTTGATCAGTATCGTCCGGCTTTTAGTTCTCCAACATCCTGTTCTCCAGGAAAACCGATTTCATCTGTCATTTATTCTCGAAAAAATATGGCTGAAAGTCAAAGCAGTACTAGTTCAAGCAGTGACAAAGATAGTTTGATGTCACATGAGAGACACGTTGCGACATCAGTGCCGGGGCATAACAAAGCCACCGAGACAGATATGGCATCAATTGATGACGATAGCTCTGAGAATCTCCTTGCTAGTGAAGAAGAAAATGGCTCTAGTAATGTCAATGCCAAAGCAACTGAGCAAGAAGTGACGAAACCATCCTATAATGAGCTATGCTCTAATATTGAATCTAAGCAGCCCAAAACAATTAGAAATATAATGATGGCATTAAAAGAAGGAAAACTTAGAGAAGCAAATTCTCCGATGAGAGGCAATCGCATAAAGCCTGTTGGTGTATCAACACCGAAAGCAAATATAGAGACATCGTCCAAATTGCCAAAACCCAATTTCACGGCTCCTGGATTGAAGCCAAATGTAGAGTCACCAGCTGTTGCACATCCAAAGGGATCCCCTGACTCTGCAAAACGAATACAAGGATCAAATCCTTCAAGGCTTCAGTCACCAGTGGCAGAATCCTCACCAAAAGTGAAACCTAGGCATGATTTGACTTCGCCATCTGGCAATGTCAAACCAGTAGAGGGAGATGGACTTCCTGATAGAACATTGCAACGGACTCCCCCTACCTTAATTAGACGACCTTCATTTCCAGCTCGAATGAAGTCAGTTGGACTTGATGTTCCGAATGTAGCAAATGATAATGGGAAGCCAGCTGCTAGAGAGCCCCAGAAGGCTTTTGGCCGAAGCTCCAAAGCAATGCAAACAGACAGCAGTAATTCTGCATCGTCTTCAGTCTCTATTCAAGGATGTGAAATTTATGATGATGCAACAATTTTTATTGACATGAGAGAAGAGACACTTCCTGATAGTGAGAATGTAGTCCACGATGTAGGTGCAGAATCGTGTCGAGACAGCGGCCCACCTACAACCTGTTCACATTGTAAGAAGGTTGAAAAGGTTCTCAACGAGACTGATGAGGTTACTCTGAGTTTTCGGGACACTACTAGTAGCAATGAGAAAATGGGTTCAAGGATAAGTCTTGATCACCCTGTTGAAGATTCTAAGGCTACTTTTGCATCAGAAGAAAGCCTTCATGTGAACCATACAAATATCAATGTTTCATCTGGATGTGATAATAAATCTGTTGGCCATCATGCTGAAGCCGCAGAGGAAATCATAGATCATCAAGATATTTCTAAGGAAATAACATTAACCACGCCTATCCAACATCCACTCGAAAGCTCTGCAGAAAACCTGGTTTGTGATGGTGTTTCTGTAAGGAAGTCTGATGGTAAGTCTGAAATAGTTTGTCAGCTGGAACCTGTGCATAAGTCCTCTGGCGAAGATAAATTCACAGTGAGGGAGCGATTATCATCAGTGGCTGAAACTGCTCCGGTGATTACAACTACTAAGCTATTGAGCCAGAAAGTCTTGCAAGAGGAAGGACCTGTCATTCAGAATCCAGCACCAGAAGGGCCAGATGCTGGCCATCTTCCTCCGGCCTTTGATGATGTCATCCATGTAATACGCCATAGCAGTTACTGCGTTGGAAGTGAGCAGCCTGCGAAAGAATCGGTCGAGAAAGGAGTTCAAAATTTAGATGTTGGTAAGTTCATCAATGTTGCAAGGGATGATGTGGAAGCAAGAAATGCAAGCCCTCCGTTGACATTGAAATCTTCTAGCTGCTCTGAACCCCCAAGCACGAAACCAAATACTTCCAATCAGTTGGAAATGAGAAACAATAGCACTCCACCGACCCTTAAATCTTCAAGTTTCTCTGATGCTTCATGCATGAAATCAAGTATTTCTGATCATTCTGGTCTAAAGGAACAAGATGTAAGCAACCCGGTTTCATTAGTTTCTGAATCTAATTCTGCTGAGTTATGTAAACACAATACTCCTACGACGGAAGACAAACCACCGGCAAAGGAAATACTGGATGTGAAATCTTTCAGGCAGAGAGCCGAGGCGCTTGAAGAGCTCCTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTCGTTCTCAAGCCCTTCGGGAAAGACAAGGTTTCCCCAAGGGAGACAGCGATTTGGTTAGCGAAAAGTCTGAAAGGAATGATGTCCGAGGAAAGCGGAGGACGCAGTTCATCATGA 3054 0.4345 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKTNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSSPTSCSPGKPISSVIYSRKNMAESQSSTSSSSDKDSLMSHERHVATSVPGHNKATETDMASIDDDSSENLLASEEENGSSNVNAKATEQEVTKPSYNELCSNIESKQPKTIRNIMMALKEGKLREANSPMRGNRIKPVGVSTPKANIETSSKLPKPNFTAPGLKPNVESPAVAHPKGSPDSAKRIQGSNPSRLQSPVAESSPKVKPRHDLTSPSGNVKPVEGDGLPDRTLQRTPPTLIRRPSFPARMKSVGLDVPNVANDNGKPAAREPQKAFGRSSKAMQTDSSNSASSSVSIQGCEIYDDATIFIDMREETLPDSENVVHDVGAESCRDSGPPTTCSHCKKVEKVLNETDEVTLSFRDTTSSNEKMGSRISLDHPVEDSKATFASEESLHVNHTNINVSSGCDNKSVGHHAEAAEEIIDHQDISKEITLTTPIQHPLESSAENLVCDGVSVRKSDGKSEIVCQLEPVHKSSGEDKFTVRERLSSVAETAPVITTTKLLSQKVLQEEGPVIQNPAPEGPDAGHLPPAFDDVIHVIRHSSYCVGSEQPAKESVEKGVQNLDVGKFINVARDDVEARNASPPLTLKSSSCSEPPSTKPNTSNQLEMRNNSTPPTLKSSSFSDASCMKSSISDHSGLKEQDVSNPVSLVSESNSAELCKHNTPTTEDKPPAKEILDVKSFRQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSSS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 294 367 - -
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 854 918 - -
Stsc30264g00016 1017 FunFam Serine/threonine-protein kinase Nek5 90 336 - -
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 549 566 - -
Stsc30264g00016 1017 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 338 367 - -
Stsc30264g00016 1017 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Stsc30264g00016 1017 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Stsc30264g00016 1017 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 850 918 - -
Stsc30264g00016 1017 CDD STKc_Nek 7 262 - -
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 294 308 - -
Stsc30264g00016 1017 Gene3D Transferase(Phosphotransferase) domain 1 90 381 - -
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 397 566 - -
Stsc30264g00016 1017 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 964 - -
Stsc30264g00016 1017 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Stsc30264g00016 1017 SUPERFAMILY Protein kinase-like (PK-like) 4 318 IPR011009 -
Stsc30264g00016 1017 MobiDBLite consensus disorder prediction 456 472 - -
Stsc30264g00016 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc30264g00016 1017 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30264g00016 Stsc-Chr30264 106942 112302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30264g00016 12 287 MAP Kinase Kinase Kinase AT3G06030 31.944 1.08e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc30264g00016 Pkinase 8.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30264g00016 K08857 - gmx:100784761 1377.07