Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30264g00006 ATGGAGTCATGGATCATCGTCCATGGCTACGTATATGACTACTATTGCACTCGTTTCCTCCCGGCGGCAGCAACAACATCTTCGTTAACGCCGGCACCAACTACACCGAAGAGTTCGACGCCCTTCACGCCAACAAAGCCAAGAATATGCTCGGATTACCGCATCGGCGGCGAACTCATCAACACCGGCTACACCTCTTCTTCTGCCGATCCTCCCCCAACACCACCATCCATGCAAGGTCAGAGGTGGAACGAGAAGAACTCCTACACATTGTTTGTGGATAACCTACCGGCAAATGCAACAAAGCAATGGCTGGTGAAGGTGTTTAATAGTGTGGGACGGGTGGTAGACGCATTCCTGTCGGTGAAAAGGAGAGCAAGTAACCCGCTGAGATTTGCCTTTGTCAGATTCGCAACAAGGAGGGAAGCCACTAGAGCGATTGAACAGCTCGATGGATGGTTGGTGTGGGGGAATAGGCTAATGGTAGTTGAGTCAAAATATAGAAGAAATGGGACAGTAGAAATGGAGAAGGAAAGGAAAGAAAAGAGAGTCTCAGCGTCAAACGTGAATACAGGAGAAGGGGAAAAGGCGAATGGTGAGCAGAGGAGACAGCGGAGTTACAAGGATGTGTTGGAAACGGGAAGACAGTTGTGGAGATGGTGGAAATGA 669 0.4963 MESWIIVHGYVYDYYCTRFLPAAATTSSLTPAPTTPKSSTPFTPTKPRICSDYRIGGELINTGYTSSSADPPPTPPSMQGQRWNEKNSYTLFVDNLPANATKQWLVKVFNSVGRVVDAFLSVKRRASNPLRFAFVRFATRREATRAIEQLDGWLVWGNRLMVVESKYRRNGTVEMEKERKEKRVSASNVNTGEGEKANGEQRRQRSYKDVLETGRQLWRWWK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30264g00006 222 CDD RRM_SF 91 162 - -
Stsc30264g00006 222 SMART rrm1_1 90 164 IPR000504 GO:0003723
Stsc30264g00006 222 MobiDBLite consensus disorder prediction 172 207 - -
Stsc30264g00006 222 MobiDBLite consensus disorder prediction 172 186 - -
Stsc30264g00006 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Stsc30264g00006 222 Gene3D - 75 213 IPR012677 -
Stsc30264g00006 222 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 87 205 - -
Stsc30264g00006 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Stsc30264g00006 222 SUPERFAMILY RNA-binding domain, RBD 67 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30264g00006 Stsc-Chr30264 51630 56631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30264g00006 62 164 Eukaryotic Initiation Factors Gene Family AT3G11400 28.333 2.08e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30264g00006 K12891 - adu:107484100 80.4925