Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30263g00025 ATGAGTCGAGGGGGTGCAGTTGGAGCTAAGGGAAAGAAGAAGGGTGCAACATTCACCATTGATTGCACAAAGCCAGTGGAGGACAAGATTATGGACATTGCTTCTCTTGAGAAGTTCCTTCAAGAGAGGATCAAGGTTGGTGGCAAGGCTGGTGCTCTTGATATGCATGTACTTGGTGATAGGTACTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAATGTGCGTGATTGGCTCAGGGTGATTGCTTCTAACAAAGATAGGAATGTCTATGAACTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAAGAAGATTAA 327 0.4343 MSRGGAVGAKGKKKGATFTIDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALDMHVLGDRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30263g00025 108 PANTHER 60S RIBOSOMAL PROTEIN L22 3 108 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc30263g00025 108 Gene3D - 57 108 IPR038526 -
Stsc30263g00025 108 Gene3D - 6 56 IPR038526 -
Stsc30263g00025 108 Pfam Ribosomal L22e protein family 60 106 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc30263g00025 108 Pfam Ribosomal L22e protein family 14 57 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30263g00025 Stsc-Chr30263 138789 140178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30263g00025 1 108 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 66.935 6.53e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30263g00025 K02891 - vvi:100261409 169.859