Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30263g00004 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGATAACAACACTAACAGCAGAGAAGGAGATGCATCACTATTATTACTTAATAATAATAACAATAAACAGAAGCAATCAGAGTCAGAGATACTTGGTGGTGGTGGTGGTAATAACTTCCATAGTCCAAATTCTAATTCTTCAACCATCACTAATAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCGCAGCCACAACCGCCACAGCCGCCTCCTAAGAAGAAAAGAAGTCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCGCCAAACACGCTGGTGACTACAAACCGTTTCATATGTGAGATCTGCAACAAAGGTTTCCAAAGGGATCAGAACCTTCAACTTCACCGGAGAGGCCATAACCTCCCATGGAAGCTTAAGCAAAGAAGCAGCAGCGAAGTGCGAAAGAGGGTGTACGTGTGTCCTGAACCCTCCTGTGTCCACCACAATCCTTCCCGAGCACTCGGAGATCTCACCGGAATCAAGAAGCACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAAAGAGATAGCTTCATAACCCACAGAGCTTTCTGTGATGCACTGGCTGATGAGAATAACAAAGTGATTAATGAAGGAGGAGGAGTAGGACATTTTCCAAAGATAGGTTCCAACTTATTGCAACCATTGATCCCAAACCTAGTTGCATCATTACCAATCACTCGCAATAACAATAATAATACTAATAGTAGTAATCCACAGATTATTGCTGCTTCTGAATTCAAGCATCAGCAGCACCCATCATCATTCCCTCACGAACTCATGCCAATGCCCATGCCTGAACAAAAGCCCTTCATCAACAACAACAACATAATAAACCCTTCATCACTACCCTCTCTTCAACTGAACTCACCACATTCCTCACTAAACATGTTCGACGATGAGAATAATGGTGGGGTCCATTTAGCTGCAGGGTTACCTCACATGTCCGCCACGGCATTGCTGCAGAAAGCTGCACAAATGGGTGCAACTACCGTGAGCAACACGAGCATGGCACCTCCATCATTTGCTTCTTCCAATAATAATGGGATCATCATGGAACACTTCATGCACAATGCTCAACATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTTCAGTGTGGTGAATAATAACGGGTGCCTTGGAATGAATGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAACAGAAGCAGTGGATTCAGCATCCCCCCAGTGATGAGTGGTAGGAGTATTAGTAGCACCATTAATATTGGTGGAGCTAAGGGGAATGAGGATGTCATGACTCTGGACTTTCTGGGAATCGGAGGTGGTGGTGGTGGTGTCAGTGGCGGCGGAGATGGTGGTGCTCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1497 0.4302 MSNITSCDSGSFSTDNNTNSREGDASLLLLNNNNNKQKQSESEILGGGGGNNFHSPNSNSSTITNNNSSSNASNANSQPQPPQPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSSEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGDKKWKRDSFITHRAFCDALADENNKVINEGGGVGHFPKIGSNLLQPLIPNLVASLPITRNNNNNTNSSNPQIIAASEFKHQQHPSSFPHELMPMPMPEQKPFINNNNIINPSSLPSLQLNSPHSSLNMFDDENNGGVHLAAGLPHMSATALLQKAAQMGATTVSNTSMAPPSFASSNNNGIIMEHFMHNAQHDNNNNNNNNNNNNNNNNNFSVVNNNGCLGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVMSGRSISSTINIGGAKGNEDVMTLDFLGIGGGGGGVSGGGDGGAHGYFGIGPLA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30263g00004 498 Gene3D Classic Zinc Finger 95 162 - -
Stsc30263g00004 498 FunFam protein indeterminate-domain 12-like 95 163 - -
Stsc30263g00004 498 MobiDBLite consensus disorder prediction 1 100 - -
Stsc30263g00004 498 Pfam Zinc-finger double-stranded RNA-binding 116 138 IPR022755 -
Stsc30263g00004 498 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Stsc30263g00004 498 SMART c2h2final6 157 187 IPR013087 -
Stsc30263g00004 498 SMART c2h2final6 116 138 IPR013087 -
Stsc30263g00004 498 MobiDBLite consensus disorder prediction 1 77 - -
Stsc30263g00004 498 MobiDBLite consensus disorder prediction 378 398 - -
Stsc30263g00004 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Stsc30263g00004 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 193 473 IPR031140 -
Stsc30263g00004 498 MobiDBLite consensus disorder prediction 78 92 - -
Stsc30263g00004 498 SUPERFAMILY beta-beta-alpha zinc fingers 114 139 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30263g00004 Stsc-Chr30263 49891 53775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30263g00004 59 369 IDZ Gene Family AT3G50700 42.234 2.91e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30263g00004 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30263g00004 - - gmx:100813556 438.343