Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30263g00003 ATGCTTCGAGCCCTACGAAACGGAATCGGAACGAGTAAAATTTTCTGCTTATCTTGTTGGATTTGGAAGTGCTTGAGGGATCGTAACATTTCTACCTCGGGGGAAATTTCTAGTATAGATAAAGATTTTATGGCGCCAACTAGGAAGCCTAGAAGTATCAATAAGCGATTCTCGAGTTTAAATGAGGTCTCTCCCGAGAAAGAGGGAATGAATTCAAATAAGAATAAGCAAAGGAAGAAAAAGCTGTCGGATAAATTGGGATCTCAGTGGAACAAAGATGAACTAGAACGGTTCTATGAGGCATATAGGAAGTATGGAAAAGACTGGAAGAAGGTGGCTGCAGCTGTACGTAACAGATCAGTTGAAATGGTGGAGGCTCTTTACAATATGAACAGGGCTTACCTATCTTTGCCAGAGGGAACAGCTTCTGTTGTTGGTCTCATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAAAGAGAGCATTGATTCACCAGGATCCCGAAAACCAGTGAAACGAAAACGTGGAAAAAGTGAGCTTGGTGTATCAAAAGATTCTGTCCAGACTCAGTCAATTGCTTCTAATGATGGTTGCCTCTCTCTATTGAAGAGAAGACGCTTTGATGGTAGCCAGCCTCGTGCAGTCGGGAAAAGGACACCTCGCGTTCCAGTTTACTACTCTTATAAGAAAGATGAAAGGGAAAGTTATGTTTCGCCTAATAAAAGACTGCTGAAGTCAGCCTTCGATGCTAATGATGATGAAGTTGCACATGTTGCAGCGTTGGCATTAACTGAGGCTGCAAAAAGAGGTGGCTCTCCTCAAGTATCCCAAACACCACCCAGAAGATCACATCAGAAGTTCTCTCCTGTTCAGAGCTGGGAAAGAATGCAACAAAAGTCTGGGACAGTTCCTGCCAAGTTTTATGATGCGTCTTTGGATGAAGAGTTCATGGAAGGTAGTATAGAAAGCAGGGGTGCTGAAAATGGGGAACATGCTAGAGATACTAGCTCCTTGAAGGAAATGGAAGGCAGTGGCACAGTTGAAGTTAATCAGAAACGGAAAAAGGTATACAGAAAGAAAGAGAGAAAGGAAAATGTTGGAACCCTTCTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACCGAAGAAGGACTTAATTGTAGTTTGAAGGAAAAAGTTGATGTTGAGGTTACTAATGCAAAGCCTCTGAAAAGGAGTAAGAAACTTTTCTTTGGAGCTGATGAAAGTTCTGCTGTGGATGCTTTGCATGCTTTGGCTGATCTGTCATTAATGATACCAGCGTCTACTATGGAATCTGAATCATCTGTCCAGTTGAAGGAAGAAAGAACAACTGTTGATAAAGACGAAAAGCCTGCCGTGCCGGAAGTCACATCAACCAGCCAAAACAGAGATAAAAGTAAACATAGTTTGAAACAGAAGGTTGTTCCTTCAGTTCCCGGAGTTGAGCTTTCATCATCCAAAAAGTCTAAAGTTGGAAGAGCAACAGTAAATGATAACGATAGCAAGGCTCTGTTTGAATCAAAAGAGCAGCTTCCCTCTGATGATAAAACATGGAAAAGAAAGCGCAAGTCCATGGTTTCAAAGGTGGTCAATGCAAAGCATGATTCTGATCCAAATGATCTGTTACATGATGAGGCTGTGGATGAAGAGAACAAACCACTGATTAAAGGAAAGCACGCTGGTCAGACATCCACCCCTGCCAAGCAAAAGTCAGTAAGATCATCAGAAAGTTCTTTGTGCACTGACCAGAAAGATTTGATCATATCAACTGCAGAAGTTCCACTTGCTAGTTTACAAACTAAACGAATTAGTAAGCGTAAAATGAGTTTGCAGAGGACATTTACGCCTAAAGAGAAGTCTTCTGAGAACAAAGTAAAAGGTCAACCTAAAAAGTTTTCTACCCCATCCCAAGATAGGGCATCAATTCTAAAGGAAAAGCTTTCTAGTTGCTTGTCCTCTTATATGGTTCGCAGGTGGTGTGCATTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTTCCAAGCGGGAGTTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGATTGACTCGTGTCGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGCAGATTCTCTGAACACTTCCTCTGTGAAGAAAGACACAAGCTTGAACAATATAGGGAATCTGTTAGGAAACATTACACTGAACTACGGACTGGGATCAGGGATGGACTTCCAACAGATTTAGCTAAGCCTTTATATGTTGGACAGCGAGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACGGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCTTCCTGAATTGGGCGTTGAATTTGTCATGGACATTGATTGTATGCCTTTGAATCCATTGGATAATATGCCAGAAGCTCTAAGGAGGCAAGGGAATGAAAACCATTCTATTGCCCAAACAAAAGCTGCTTTCATTGATCAACTCTATATGCAGCAAGCAGTGTGTGCTCAACCATGTAACATGGCAGACCATCAAGCTAAGGAAGCTGACCTACATTCCCTTTCTGAGCTGACACGTTTTCTAGATAAAAAGGAAACACTGTTATCGGAGCTTAAAAATACCAACAATGACATATTGGAGAACCAAATTGATGGTGGCAGCTTTACAGATTCAGAGGCTCTCAGGAAACATTATGCTACGGTTTCTAATGCTCTGCTTCATCTGAGGCAACGGAATACTTACACAGGAAACACCCTACCATGGATGAAACCCCAAGCAAATTTCAACGTCCATGATGGCATTCCCAGTATGTTGGATAGTTCTCTAGCTCAAGAGTTAGGATCAACTGTTATTGAAATTATTAAAGGATCCAAGCTAAAAGCACAAGCAATGGTGGATGCCGCATTTCAGGCCTTAGCTTCAGTGAAGGAAGGCGAAGATGCTTTCCTCAGGATTGGACAGGTATTGGATTCTATCAATTATCAGCAGTTGGCCCCCAACTCCTCGCTACCTGTGACGAAGTCCCAAGAGCAAGGGAATGGAAGTCTCGATCATCATAGTCGATCAATTTGCTCTTCATCTGAGCCTTTACTTAATGATGCGTCTGGTCCAAAATTGCATAATGATTCTGACAAAGGAGATGCTCAAATTCCTTCAGAGCTCATCACTTCCTGCGTCGCCATATTGATCATGATCCAGACTTGTACTGAACGACAATATCCTCCATCCGATGTGGCTCAGATATTGGATTCTGCTGTCACCAGTCTGCATCCATGCTGTCCCCAAAACCTTCCTATTTACAGAGAAATTCAAACGTGCATAGGAAGGATTAAGACCCAGATTTTAGCTCTCATCCCTACATCTACATGA 3432 0.4202 MLRALRNGIGTSKIFCLSCWIWKCLRDRNISTSGEISSIDKDFMAPTRKPRSINKRFSSLNEVSPEKEGMNSNKNKQRKKKLSDKLGSQWNKDELERFYEAYRKYGKDWKKVAAAVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESIDSPGSRKPVKRKRGKSELGVSKDSVQTQSIASNDGCLSLLKRRRFDGSQPRAVGKRTPRVPVYYSYKKDERESYVSPNKRLLKSAFDANDDEVAHVAALALTEAAKRGGSPQVSQTPPRRSHQKFSPVQSWERMQQKSGTVPAKFYDASLDEEFMEGSIESRGAENGEHARDTSSLKEMEGSGTVEVNQKRKKVYRKKERKENVGTLLLDDGGEACSGTEEGLNCSLKEKVDVEVTNAKPLKRSKKLFFGADESSAVDALHALADLSLMIPASTMESESSVQLKEERTTVDKDEKPAVPEVTSTSQNRDKSKHSLKQKVVPSVPGVELSSSKKSKVGRATVNDNDSKALFESKEQLPSDDKTWKRKRKSMVSKVVNAKHDSDPNDLLHDEAVDEENKPLIKGKHAGQTSTPAKQKSVRSSESSLCTDQKDLIISTAEVPLASLQTKRISKRKMSLQRTFTPKEKSSENKVKGQPKKFSTPSQDRASILKEKLSSCLSSYMVRRWCAFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLCEERHKLEQYRESVRKHYTELRTGIRDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRVQFDLPELGVEFVMDIDCMPLNPLDNMPEALRRQGNENHSIAQTKAAFIDQLYMQQAVCAQPCNMADHQAKEADLHSLSELTRFLDKKETLLSELKNTNNDILENQIDGGSFTDSEALRKHYATVSNALLHLRQRNTYTGNTLPWMKPQANFNVHDGIPSMLDSSLAQELGSTVIEIIKGSKLKAQAMVDAAFQALASVKEGEDAFLRIGQVLDSINYQQLAPNSSLPVTKSQEQGNGSLDHHSRSICSSSEPLLNDASGPKLHNDSDKGDAQIPSELITSCVAILIMIQTCTERQYPPSDVAQILDSAVTSLHPCCPQNLPIYREIQTCIGRIKTQILALIPTST 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 326 359 - -
Stsc30263g00003 1143 SUPERFAMILY Homeodomain-like 85 133 IPR009057 -
Stsc30263g00003 1143 Gene3D - 25 142 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 326 344 - -
Stsc30263g00003 1143 FunFam Protein ALWAYS EARLY 3 isoform A 46 142 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 515 534 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 54 68 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 1023 1043 - -
Stsc30263g00003 1143 PANTHER LIN-9 44 1142 IPR010561 GO:0006351|GO:0017053
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 624 639 - -
Stsc30263g00003 1143 ProSiteProfiles SANT domain profile. 85 122 IPR017884 -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 54 86 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 159 175 - -
Stsc30263g00003 1143 SMART DIRP_2 678 779 IPR033471 -
Stsc30263g00003 1143 Pfam Myb-like DNA-binding domain 88 125 IPR001005 -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 159 193 - -
Stsc30263g00003 1143 Pfam DIRP 677 778 IPR033471 -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 575 589 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 541 569 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 448 466 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 273 307 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 620 650 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 276 305 - -
Stsc30263g00003 1143 CDD SANT 90 124 IPR001005 -
Stsc30263g00003 1143 Coils Coil 882 902 - -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 69 86 - -
Stsc30263g00003 1143 SMART sant 86 134 IPR001005 -
Stsc30263g00003 1143 MobiDBLite consensus disorder prediction 442 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30263g00003 Stsc-Chr30263 18480 27624 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30263g00003 DIRP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30263g00003 - - gmx:100789533 1447.18