Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30263g00001 GATGCATACACGTATAAGGTTGCTGCTTCTCTCGAGAAAGCCTTGCAGCTTAAAGGCGGCGTTGGTTCAACAAGGCAGCATGTGCATGGCTGCAGCCTTGTACGAGCAAGAAGATTCTATGGTTACCACTCATTTGAGGAGTTATTTGCTGGTGCTGTTCTTGACAAATGTTTACAACCTCATGAATCCCATATTCCCTATATTCTTCAGTTTTTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTAACAAAAATGAAGTTTCGCCATCCCATACCAGACTCTTCTCACAAGAAATCAAGTATTTATAGCAAGCATATAATGGCAGATTCAGGTGCTGATGTATGTTTGGAGTCAAAGATGTGGATATCTTCCACTGTCCCATCTGATTGGATGTGGTCACCTGCTGGTGAATTTGGTGCTTCATCAAACGATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTCAATCAGCAATTTATAATGTATTCATCACTCTCACAAACATGCTCAGATGTGAAAATGGTTCAATCACTTGTACCAATATGGGAGGAACAGCAGAAAAGGACTGGAATTAACGAGGCTAGTATGCCTCCTGACCCTGGAAAACCACTTCCAGAAGATGTTATGAAACTTCTTTCTGCTGGTCTTTACTTTGAGAAAAGACTTCTTGAATTGTGTAACGAAGCTGGAACCACCGTGTCTTCAACTCCTTCTGAGACTCCTTCTCAGAAAGTGTTAAGGTTTGCTGCAGAATGGGAAGCCCAACATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATAAATTCCGATGATGACCTTGCTTGTGAAACAATGCTGAGTCCCCTGTTACCGGCTGCAACTATTGATAAAATGGTGGAGAAAGCTAGCATGCAATATGAGAGTGAGTCCCAAAAGGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTCTTGTTCAATTGATCACAGTGATCCTATTGAAGTGTCAACTAAGATTACATTACCCCAAGTTGATGGTTCAGCTGATGATGATTATTCAATTCCATGTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCCTTCTGAGTACCATGTCCTGCACAGCACCGATACAGCCGTAGTTAGTAAAGATAAAAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAAATGCAGCGGAGATCAAGCTACTTTGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGAAGATTCTACCGACTCTGATAACGGGTTTAGAAAGAGTACTTGTATTACAAGAAATGTGGACAGAACTGTTTCAGAATCAAAAGAACAGAGATTTGTTAACTGCTCTTTGCGGGATTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATACGATTCTGGAACATCTAAAAAGCTTCTTTTGGACAGGCGTGAGGGGCCGAATACCTGCCACTGGAAAAAACAATTGGATTTGAAAGCAATTCAAACCAACGAGGAAGAAACAAAACCACTTAAAAATTGTGATCTTAAATTGAGTAGTCGTGATAGTTTAGTGTGTCAGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGCTGATATGCAAAGGGATGAATGTTTTTCTGAAAATGAAAATGGGGCTCCAGAAGCAAGTGAGCTGTTAAGAACCTCTGAAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTGTCCAGATGTTCAGTTATTGAGAACAGATACCGATCATAAAATCATAGCTCCTGAGAGCTGTCAACAAACTTATTCTGCAGCTTCAAGCAGTGTACAGAACTCATCCATTGACGATAAAGTCTCATGCAAGCATAATTACATGGATCAGGATTCTCGTGGAAGCATATCTTTTGCGCAACAAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAGCATGGTGTAGATTTACTGGGTGAGAAGACGATTGTCTCGGAGTCTATTGATGATGACCTGAAGGATAAACGCATGAAATTAACTGAAGTAAGTGTAGCTAAGGAAACCCCCTTGACTGACAAGAATCTTGAAAATCTTTTGCCCTTGCCAACCATGTCTGATTCCAATTCACATCTGGATGAGGAAAGCTGTGATGAAATGTCAGATGTTTTTCTTCCCATTTCCATAAAGGATTCCCAGAAAGAAATGGAGTCTTGGAATAAATGTGTTACAATTAAAGCTCCTCGATCTCATGGGAAAAAGGATATTGCTATTCACTATCAAAATGATGGCTCTCCCCTCTACCTGTTAACACCGAATATTTTGCCTCCATCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGATGTAGTGGCCAAGGATGTGCCTGAACACACTTCTGGACTTACTCTTCAGCCTAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCACCATGCAATAATGGAGGACAAACAGAAACAGTAAAGGTGAGCCCGGATGGTTCACAGGATAATTCTCAGATATCAGGCCCTATGAGGAGATCAAATTCTACCCCTCTGAGTCAAATCGGGTTTCGAGACCCTGCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTTCTTGCGGAATCGAGAGCAGACCTTTTACCTGATCCTCAGTTTGACGCTATCAACATTGTAGTTCTTGGTTTTCAGAATGATTGTGATTCTATTGTCGAAGTTCTCGTTCTTTTGCATAATAAATTTCAACCTTGTCAGAGAAGTTTTGATGGCTTAGCAGGATGCAAACTGTTGGTATTTTCTGATGAAAAGCACTTGTTAAAGGAATTTATAAATATCGTGTCTTCATCTGACCCTGATATTTTGATGGGTTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACACTTTGGTCTAGGATTAATTAACCGTTTGTCACGAACTCCATCTGATTCATGGGTTGCTTCTGAAGATGTGAAAGCTTCTGAAAAAGGTATCTTGGAATTAGACGACCCAGATACTCCTAGTATAGATTGTTGTGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGAAGGACACATGCGAGTGGAGTTCATGTTGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTCGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCATTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGTCGAGCAAGATATCAGTGTATCAAATATGTTGTAGAAAGAGCAAAGCTGAACTTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATTGACTTTTTTTCTGTCCTGTCACGTGGTTCACAATACCGGGTTGAATCCATGCTTTTGAGGTTGGCCCATACACAAAACTATCTTGTTATCTCACCTGGAAAGCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCACTAGTGATGGAACCAGAGTCAGGATTTTATTCCGATCCTGTTGTTGTATTTGACTTCCAGTCTTTATATCCATCTATGATAATCGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTAGCTTCGAAGGATAACACGCTTGGGGTCAGTTCATTTTCACCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTTGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAACTGGTCCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTTGCATTGAAGCTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCCATCTCATTCGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCAGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTACGAAAGCCCTGAACAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTCTTTCAGCATCAGGATTTATTGGAGGTCAAGTGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTTGTCTTTGCAAAGGAGGTTCGATTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCCGCTGCAATTGTGGCCACTAAGGCAATGCGGTCTGACCGCAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCACGGTGAGCCTGGGGCCCGCCTGTCTGATATGGTTGTGGATCCACTGGAAGTGTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTGGCCTTGTTGGTGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGCCCCATAAGGGAAGCATCTGTAAAGAATAAGTTCTCTTCAAATTTCCAGAGAACCAGAATTGATTATTACTATCTCTCTAAACATTGTATAGTATGTGGCGAGTTGGTCCAGGCATCAGCACGTTTTTGTAGTAGATGTTCCGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCAAAGTTGGAGCGAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGAGGCGGCGATAGTCTACTCGAAAGCGGGGTGAAGTGCACGTCCATTGCATGCGAAGTGTTCTATGAGAGGCGAAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAGTGCACGGTAGAATGGTTCTAA 5313 0.4169 DAYTYKVAASLEKALQLKGGVGSTRQHVHGCSLVRARRFYGYHSFEELFAGAVLDKCLQPHESHIPYILQFLVDYNLYGMGHLHLTKMKFRHPIPDSSHKKSSIYSKHIMADSGADVCLESKMWISSTVPSDWMWSPAGEFGASSNDKPYCPKRQSTSELEGDASVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGINEASMPPDPGKPLPEDVMKLLSAGLYFEKRLLELCNEAGTTVSSTPSETPSQKVLRFAAEWEAQHLLKWLATSQAAEDINSDDDLACETMLSPLLPAATIDKMVEKASMQYESESQKECQDILDSVDDMLELKFSKQKPSCSIDHSDPIEVSTKITLPQVDGSADDDYSIPCASLAETSSAAERNSESRRPSEYHVLHSTDTAVVSKDKRSKQWGSLPFSVADKVKCSGDQATLQVTCPFESQSEDSTDSDNGFRKSTCITRNVDRTVSESKEQRFVNCSLRDLMRRKRSFRVEQTEYDSGTSKKLLLDRREGPNTCHWKKQLDLKAIQTNEEETKPLKNCDLKLSSRDSLVCQKLPLPDGKDSFLQADMQRDECFSENENGAPEASELLRTSENQGSLVYMPNPCPDVQLLRTDTDHKIIAPESCQQTYSAASSSVQNSSIDDKVSCKHNYMDQDSRGSISFAQQVLLNERVDNKKHGVDLLGEKTIVSESIDDDLKDKRMKLTEVSVAKETPLTDKNLENLLPLPTMSDSNSHLDEESCDEMSDVFLPISIKDSQKEMESWNKCVTIKAPRSHGKKDIAIHYQNDGSPLYLLTPNILPPSVTSVQRWLSLDERDHTSQETDVVAKDVPEHTSGLTLQPKLYDDSSAEKKPPCNNGGQTETVKVSPDGSQDNSQISGPMRRSNSTPLSQIGFRDPASVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVVLGFQNDCDSIVEVLVLLHNKFQPCQRSFDGLAGCKLLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASHFGLGLINRLSRTPSDSWVASEDVKASEKGILELDDPDTPSIDCCVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPFIHNKVLTRWFSSGPGRARYQCIKYVVERAKLNFEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLVISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKDNTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVCRGVLPRLLEEILSTRIMVKQAIKKLVPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLIQWFLEMPRPIREASVKNKFSSNFQRTRIDYYYLSKHCIVCGELVQASARFCSRCSENEVAAATAVISKTSKLEREMQHLVAICHHCGGGDSLLESGVKCTSIACEVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF 1770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30263g00001 1770 Pfam DNA polymerase family B 1177 1624 IPR006134 GO:0000166|GO:0003677
Stsc30263g00001 1770 Gene3D - 1478 1639 IPR042087 -
Stsc30263g00001 1770 Pfam C4-type zinc-finger of DNA polymerase delta 1669 1742 IPR025687 -
Stsc30263g00001 1770 Pfam DNA polymerase family B, exonuclease domain 971 1039 IPR006133 -
Stsc30263g00001 1770 ProSitePatterns DNA polymerase family B signature. 1403 1411 IPR017964 GO:0000166|GO:0003676
Stsc30263g00001 1770 Gene3D Palm domain of DNA polymerase 1222 1467 IPR023211 -
Stsc30263g00001 1770 PRINTS DNA-directed DNA-polymerase family B signature 1401 1409 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc30263g00001 1770 PRINTS DNA-directed DNA-polymerase family B signature 1236 1249 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc30263g00001 1770 PRINTS DNA-directed DNA-polymerase family B signature 1345 1357 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc30263g00001 1770 SMART polmehr3 909 1415 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc30263g00001 1770 FunFam DNA polymerase 1478 1646 - -
Stsc30263g00001 1770 Gene3D DNA Polymerase, chain B, domain 1 36 92 - -
Stsc30263g00001 1770 MobiDBLite consensus disorder prediction 858 895 - -
Stsc30263g00001 1770 CDD POLBc_zeta 1184 1631 - -
Stsc30263g00001 1770 MobiDBLite consensus disorder prediction 826 895 - -
Stsc30263g00001 1770 CDD DNA_polB_zeta_exo 908 1158 - -
Stsc30263g00001 1770 SUPERFAMILY Ribonuclease H-like 27 1198 IPR012337 -
Stsc30263g00001 1770 SUPERFAMILY DNA/RNA polymerases 1223 1635 IPR043502 -
Stsc30263g00001 1770 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 1763 IPR030559 GO:0006281|GO:0016035|GO:0019985
Stsc30263g00001 1770 Gene3D - 937 1219 IPR036397 GO:0003676
Stsc30263g00001 1770 FunFam DNA polymerase zeta 1303 1362 - -
Stsc30263g00001 1770 Gene3D Helix hairpin bin 1302 1362 - -
Stsc30263g00001 1770 FunFam DNA polymerase 918 1219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30263g00001 Stsc-Chr30263 174 10753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30263g00001 947 1752 Core DNA Replication Machinery Family AT5G63960 28.690 7.04e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30263g00001 K02350 - gmx:100777934 2487.99