Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30262g00013 ATGGTGGCTGAAGCAGAGCTTGTTTGTCAGCAGAGCGTGGCTTTGTTGGATGTGAAGTATTTTCCGAACAAAGGAACTGGAATTCACGAGATCGAAGGCGCAGCACCAACTGCAATCTCGCCTCCGAGTTTTGACCGAATTAGACCTTCTGAATCGGTCTCCGCTCAGTTACTCACTTCACAAGATGAAGCTGCTGGACCTGCTGATAGAATCTCAGATGCAGCTCTTGAAACTGCAGTTCTGCAGTTTGTTCCCTGCATCCGTTCTGGTAGTTTTGCTGATATCGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCACCTCGGATCGCTACACAGTTTTCCTAAACCGAGTGCTTTCTACGGGGTTTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATGTAAGAAAGAATGTTATAAAATTCTTCTTTGAGGACGGTAGTTTCCCACAGACATCTGAAGTTGACAACATTTTTCTGGAAGAGGTTGAGAATTCCCTAAGGAAAGCATTTCTTTCGGCTGACTCAGCATTGGCTGATGATTGCAATGTGAACTCTTCATCAGGGACTACAGCTCTCACTGCTTTGGTACTTGGAAGGCTTCTGATGGTGGCCAATGCTGGTGACTGCCGGGCAGTTCTCTGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATATATGCATCAGAGCGGAGGCGAGTTGAAGAATTGGGCGGTTACATAGAGGATGGTTATCTTAACGGTGTTCTGTCCGTTACTCGAGCCCTAGGTGACTGGGACATGAAGTTACCAAAGGGTTCTCCCTCCCCTTTGATTGCAGAGCCCGAGTTCCGGCAAATGGTTCTAACAGAGGACGACGAATTCCTCATCATTGGGTGTGATGGCATCTGGGACGTGATGTCAAGTCAGCATGCAGTTAGCCTTGTCCGCAAAGGCCTGAGGCGACACGATGACCCTGAGAAATGTGCGAGGGACCTCGTTATGGAGGCATTACGCTTGAACACATTCGACAACCTCACTGTTATCATTGTTTGCTTCTCCTCCCTTGACAGCAATGAGCCCACTACACCTCCATCTCCGCCTTGCCAGCGGAAAATTAGATGCTGCAGCCTCTCTGCGGAGGCTCTTTGTAGCTTGAGGAGCTTATTGGAAGGGAGTGCTAGCAACTAA 1206 0.4826 MVAEAELVCQQSVALLDVKYFPNKGTGIHEIEGAAPTAISPPSFDRIRPSESVSAQLLTSQDEAAGPADRISDAALETAVLQFVPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLHSFPKPSAFYGVFDGHGGPEAAAYVRKNVIKFFFEDGSFPQTSEVDNIFLEEVENSLRKAFLSADSALADDCNVNSSSGTTALTALVLGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYASERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGSPSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDSNEPTTPPSPPCQRKIRCCSLSAEALCSLRSLLEGSASN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30262g00013 401 Gene3D - 77 364 IPR036457 -
Stsc30262g00013 401 SMART PP2C_SIG_2 103 358 IPR001932 -
Stsc30262g00013 401 FunFam Probable protein phosphatase 2C 22 72 361 - -
Stsc30262g00013 401 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Stsc30262g00013 401 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Stsc30262g00013 401 CDD PP2Cc 87 358 IPR001932 -
Stsc30262g00013 401 PANTHER PROTEIN PHOSPHATASE 2C 77 356 IPR015655 GO:0004722|GO:0006470
Stsc30262g00013 401 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Stsc30262g00013 401 SUPERFAMILY PP2C-like 82 360 IPR036457 -
Stsc30262g00013 401 SMART PP2C_4 78 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30262g00013 Stsc-Chr30262 113071 115592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30262g00013 101 397 PP2C-type Phosphatase Gene Family AT3G62260 70.805 5.20e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30262g00013 K14803 - gmx:100819791 679.478